Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq566 138 1e-27 seq53 134 2e-26 seq36 122 1e-22 seq207 116 5e-21 seq1 109 7e-19 seq244 107 3e-18 seq223 84.2 3e-11 >seq566 Length=34611 Score = 138 bits (152), Expect = 1e-27 Identities = 335/498 (67%), Gaps = 12/498 (2%) Strand=Plus/Plus Query 198456 GATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAA 198515 ||||||| ||| | || ||| || || || || || ||||| ||||| ||| | Sbjct 14519 GATGTTGCCGGTGTTGATGAAGCAAAAGAAGATCTTGAAGAGATCGTTGAGTTTTTGCGT 14578 Query 198516 AACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGT 198575 | || |||| | | | | |||| || || || ||||||| ||||| | || Sbjct 14579 GATCCGCAAAAATTCCAACGCTTAGGTGGTCGCATTCCTCGTGGTGTGCTTCTTGTTGGA 14638 Query 198576 GCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCC 198635 | || |||||||||||||| ||||| || ||| | | || |||||| | | ||| || Sbjct 14639 CCTCCAGGTACTGGTAAAACACTTCTTGCGCGTTCAGTTGCTGGTGAAGCAAATGTACCG 14698 Query 198636 TTTCTTCAGTG-CTCCGCGGC-GAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGC 198693 || || || ||| | | || ||| | || |||||||| ||||| ||||| | Sbjct 14699 TT-CTACACAATCTCAGGTTCTGACTTTGTT-GAAATGTTCGTGGGTGTGGGTGCATCTC 14756 Query 198694 GCGTCCGGGAACTCTTTGAGCAAGC-ACGTGAAAATCAACCATGTATCATCTTCATTGAT 198752 | || || || | || || || || | | ||| ||| || || |||||||| || ||| Sbjct 14757 GTGTGCGTGACATGTTCGAACAGGCTAAGAAAAACTCA-CCTTGCATCATCTTTATCGAT 14815 Query 198753 GAGATTGACGCTGTTGGTAAGAAGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGT 198812 |||||||| ||||| ||| | ||||| | | | |||||||||||||||| Sbjct 14816 GAGATTGATGCTGTGGGTCGTCATCGTGGCGCTGGTCTTGGCGGTGGTAATGATGAGCGT 14875 Query 198813 GAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTTTGA---CAATGAGACTGGT 198869 ||||| || | ||||| | || |||||||||||||||||| ||||| | || Sbjct 14876 GAGCAAACATTGAACCAATTGCTTGTTGAGATGGATGGTTTTGAAGCGAATGAAA---GT 14932 Query 198870 ATCGTGGTGATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCC 198929 ||| | | ||||| ||||| || | ||| | || ||| ||| |||| || || Sbjct 14933 ATCATTCTTATTGCGGCTACCAACCGTCCTGACGTGCTTGATCCAGCATTGCTGCGCCCA 14992 Query 198930 GGTCGATTCGACCGTAAG 198947 ||||| || |||||| || Sbjct 14993 GGTCGTTTTGACCGTCAG 15010 >seq53 Length=625924 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| || || ||||| || || || || ||||| ||||| || ||| | || Sbjct 125623 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125564 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| ||||| || || || ||| Sbjct 125563 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125504 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || |||||| || |||||| Sbjct 125503 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125444 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || |||||||| || || ||||| || || || || || ||||| Sbjct 125443 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGG 125397 >seq36 Length=729648 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || |||||||| || || ||| | || Sbjct 221823 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221882 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| | | || ||||| || || ||||| || || || || |||||| Sbjct 221883 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGATCAG 221942 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || || || || |||||| Sbjct 221943 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 222002 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || || ||||| ||||| ||||||||||| Sbjct 222003 ATCCAGAAAGAGTCGACTCTCCACCTTGTTCT 222034 >seq207 Length=238886 Score = 116 bits (128), Expect = 5e-21 Identities = 341/517 (66%), Gaps = 14/517 (3%) Strand=Plus/Plus Query 198470 CGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAAAAGTA 198529 ||| || || ||| |||||||||||| | || || || || || |||||||| || || Sbjct 185009 CGATTCCGCCAAGTTCGAGCTCGAGGAGGTGGTGGACTTCCTCAAGAACCCCGACAAATA 185068 Query 198530 CTATGGAAGT-GGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGTACTG 198588 | | | || || ||| ||||| || || | |||||| || | || || || | Sbjct 185069 C-ACAAAGGTCGGCGCCAAGATCCCTCGCGGCGTGATTCTCGAGGGGCCTCCCGGAACGG 185127 Query 198589 GTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAGTGCT 198648 |||| || || | || ||||| |||| || || | | || ||| ||| || || Sbjct 185128 GTAAGACTCTCATCGCCCGTGCCGTCGCCGGCGAGGCCGG-GTGCCCGTTCATCGCCACT 185186 Query 198649 CCGCGG--CGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGAACT 198706 | || |||||| | | ||||||||||| || || ||||| ||| || || || | Sbjct 185187 TCCGGGTCCGAGTT-CGTTGAGATGTTCGTGGGCGTAGGTGCCGCGCGTGTGCGCGACTT 185245 Query 198707 CTTTGAGCAAGCACGTGAAAATCAAC----CATGTATCATCTTCATTGATGAGATTGACG 198762 || || |||| | |||| ||| | || ||||||||||| || ||||| |||| Sbjct 185246 GTTCGA-CAAG---GCGAAAGAGAACTCGCCGTGCATCATCTTCATCGACGAGATCGACG 185301 Query 198763 CTGTTGGTAAGAAGCGTGGTGGAACTACTACACCTGGTAATGATGAGCGTGAGCAGACGA 198822 | || || | |||| || | | | ||| || || ||||||||||||||| Sbjct 185302 CCGTCGGCCGGCAGCGCGGCAGCGGCATGGCCGGTGGCAACGACGAGCGTGAGCAGACGC 185361 Query 198823 TTAACCAGCTTCTCACTGAGATGGATGGTTTTGACAATGAGACTGGTATCGTGGTGATTG 198882 | |||||| | ||| |||||||| || || | | | || | | || || | Sbjct 185362 TGAACCAGATGCTCGTGGAGATGGACGGCTTCGTGGGCAACCCGGGCGTGATCGTCATGG 185421 Query 198883 CTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATTCGACC 198942 |||| || || | || || ||||| || || || ||||| || ||||| || ||||||| Sbjct 185422 CTGCCACCAACCGTATCGACATCCTCGACGACGCCCTGCTCCGCCCCGGCCGCTTCGACC 185481 Query 198943 GTAAGATTCAAGTGTCCCTTCCAAGTGTCAAGGGCCG 198979 | | | | | ||| ||| || | || ||||||| Sbjct 185482 GCAGGGTGCTGGTGGACCTGCCGAACTTCCAGGGCCG 185518 >seq1 Length=7344524 Score = 109 bits (120), Expect = 7e-19 Identities = 242/357 (68%), Gaps = 17/357 (5%) Strand=Plus/Plus Query 195638 GAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAA 195697 || ||||| | ||||| || |||||||| ||||||| ||| |||| | || || Sbjct 802313 GAGATTTCTGCGATGGTTCTGCAGAAGATGAAAAAGACTGCTGAAGATTTCCTCGGACAA 802372 Query 195698 ACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCG 195757 |||| || || ||||| ||||| ||||| || |||| || || || || ||||| Sbjct 802373 GAGGTGACGGAAGCGGTTGTTACTGTTCCTGCCTATTTCAACGACTCTCAGCGTCAGGCT 802432 Query 195758 ACAAAGGACGCTGCTGCTATTGCGGGTCTAAA---CTGTCTTAGAATTATCAATGAACCA 195814 || || || |||| || ||||| ||||| || | | | || | ||||| || || Sbjct 802433 ACTAAAGAAGCTGGTGAGATTGCTGGTCTGAAGATCAGCCGTA---TCATCAACGAGCCT 802489 Query 195815 ACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGT--AT 195872 || || || || | | || || ||||||||| |||| | || | | ||| || Sbjct 802490 ACTGCTGCAGCCCTGTCGTACGGCCTGGACAAG--CAAG--CTAA---AGACATGACCAT 802542 Query 195873 TGA--TCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGG 195930 || | | ||| |||||||||||||| |||||| | || | || | | | | ||| Sbjct 802543 TGCCGTGTATGACCTCGGTGGTGGTACATTTGATATTTCCATCCTGGAATTGGGTGATGG 802602 Query 195931 TATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | |||| || |||||| | || |||||||| || || |||||||| || || || Sbjct 802603 TGTATTTGAGGTAAAGTCAACCAACGGTGATACGCACCTGGGTGGTGACGACTTTGA 802659 Score = 96.9 bits (106), Expect = 5e-15 Identities = 209/311 (67%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 198456 GATGTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAA 198515 ||||||| || | ||| ||| ||||| || | |||||| ||||| || ||||| Sbjct 4381798 GATGTTGCTGGCCTGGACGAAGCCAAGGAAGAAGTAATGGAGATCGTTGACTTCCTTAAG 4381857 Query 198516 AACCCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGT 198575 || || |||| ||| || | |||| ||||| |||| | | || | || Sbjct 4381858 AATCCTAAAAAATACACTGCACTGGGTGGTAAGATCCCTAAGGGTGTTTTGCTGGTAGGC 4381917 Query 198576 GCCCCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCC 198635 | ||||| |||||||| ||| | || ||| || | || |||||| | ||| ||| Sbjct 4381918 CCTCCGGGAACTGGTAAGACCTTGCTGGCTAAAGCAGTGGCTGGTGAAGCAGCTGTTCCC 4381977 Query 198636 TT--TCTTCAGTGCTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGC 198693 || ||| || ||| | | ||| | |||||||| || || || ||||| || Sbjct 4381978 TTCTTCTCCAT--CTCTGGTTCAGACTTCGTGGAGATGTTTGTGGGGGTAGGTGCCTCGC 4382035 Query 198694 GCGTCCGGGAACTCTTTGAGCAAGCACGTGAAAATCAACCATGTATCATCTTCATTGATG 198753 | || || || |||||| |||| || ||||| || || |||||| ||||||| || | Sbjct 4382036 GGGTACGTGACCTCTTTAAGCAGGCTCGTGAGAAGGCTCCTTGTATCGTCTTCATCGACG 4382095 Query 198754 AGATTGACGCT 198764 ||||||||||| Sbjct 4382096 AGATTGACGCT 4382106 >seq244 Length=185980 Score = 107 bits (118), Expect = 3e-18 Identities = 323/490 (66%), Gaps = 14/490 (3%) Strand=Plus/Minus Query 198465 GGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAACCCCGAA 198524 || |||||| ||| ||||| ||||| || ||||| || || || || ||||| | Sbjct 159475 GGCATCGACGAAGCCAAGGAAGAGCTGGAAGAGATCGTCGAATTCCTGCGCAACCCGCAG 159416 Query 198525 AAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCCCCGGGT 198584 |||| | | || | | ||||| || || ||||| | || | ||||| Sbjct 159415 AAGTTCAGCCGTCTCGGCGGCAAGATCCCCAAAGGCGCGCTTCTGGTTGGCCCTCCGGGC 159356 Query 198585 ACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTTCTTCAG 198644 || ||||| || || || || ||||| ||||| ||||| || | || ||||| ||||| Sbjct 159355 ACCGGTAAGACGCTGCTGGCCCGTGCCATCGCTGGTGAGGCGGGCGTGCCCTT-CTTCAC 159297 Query 198645 TG-CTCCGCGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCGTCCGGGA 198703 ||| | || ||| | || |||||||||||||| ||||| || ||||| || Sbjct 159296 CATCTCGGGCTCGGACTTCGTTGAAATGTTCGTTGGTGTGGGTGCATCCCGTGTCCGCGA 159237 Query 198704 ACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAGATTGACG 198762 | || || || || | ||| || ||| |||||| ||||||| || || || |||| Sbjct 159236 CATGTTCGAACAGGC-CAAGAAGAACGCACCCTGTATCGTCTTCATCGACGAAATCGACG 159178 Query 198763 CTGTTGGTAAGAAGCGTGGTGGAACTACTACACC--TGGTAATGATGAGCGTGAGCAGAC 198820 | || ||| | ||||||| | ||| | |||||| || || || || ||||| Sbjct 159177 CCGTGGGTCGCCATCGTGGTG--CCGGCTATGGCGGTGGTAACGACGAACGCGAACAGAC 159120 Query 198821 GATTAACCAGCTTCTCACTGAGATGGATGGTTTTGA---CAATGAGACTGGTATCGTGGT 198877 | | |||||||| || || ||||| || ||||| ||| ||| ||| || | | Sbjct 159119 GCTGAACCAGCTGCTGGTCGAAATGGACGGGTTTGAGGCCAACGAG---GGTGTCATCAT 159063 Query 198878 GATTGCTGCTACAAATAGGATTGATATCCTAGATGATGCACTGCTTCGTCCCGGTCGATT 198937 | || || || || | || | || || || ||||| |||||||| || || Sbjct 159062 CCTGGCCGCCACCAACCGTCGCGACGTTCTGGACCCCGCGCTGCTGCGTCCCGGCCGTTT 159003 Query 198938 CGACCGTAAG 198947 ||||||| || Sbjct 159002 CGACCGTCAG 158993 >seq223 Length=213198 Score = 84.2 bits (92), Expect = 3e-11 Identities = 341/532 (64%), Gaps = 4/532 (1%) Strand=Plus/Plus Query 78053 GCAACACCTACTTTGTTTAATGCAGGTACTCCCCGTCCACAGATGTCATCTTGTTTCCTA 78112 || || || ||| |||| || || || || || | | |||||||| ||||| ||||| Sbjct 55177 GCGACCCCGACTCTGTTCAACGCCGGCACCCCGCACGCGCAGATGTCGTCTTGCTTCCTC 55236 Query 78113 CTTGCAAATAAGGAG-GACTCTATTAATGGTATATACGGGACTCTCACAGAGTGTGCTCA 78171 || || || | ||| || || | | || || | || ||||| | || ||||| || Sbjct 55237 CTC-CACATGAAGAGCGATTCCGTGGAGGGGATTTTCGACACTCTAAAGGACTGTGCGCA 55295 Query 78172 GATTTCTAAGTGGGCTGGTGGTATAGGTCTTCATATTCACGATGTTCGTGCAAACAAGTC 78231 || || |||| || || ||||| || | ||| ||||| | || | | | || Sbjct 55296 CATATCCAAGTACGCGGGGGGTATCGGCGTGAGTATCCACGACATACGCGGGACCGGCTC 55355 Query 78232 CAGGATTAGAGGAACTAATGGTCAGTCTGATGGAATTATTCCTATGCTTAGGGTATTCAA 78291 || |||||||| || ||||| || || | || ||||| || | ||||| Sbjct 55356 GTACATCAGAGGAACGGGCGGAAAGTCTAGCGGCATCGTGCCGATGCTGCGGATGTTCAA 55415 Query 78292 TG-CTACAGCACGCTATGTCAACCAAGCGGGTCGTAGGAAGGGGTCATTCGCTATGTACC 78350 | || | | |||| || |||||||||| || ||||||||||| || || | |||| Sbjct 55416 CGACTGCT-CGCGCTTCATCGACCAAGCGGGGCGCAGGAAGGGGTCGTTTGCCTTCTACC 55474 Query 78351 TTGAACCTTGGCACGCCGATGTAATGGATTTTTTGGAACTTCGTCTCAACCAGGGTGACG 78410 | || || ||||||||||| || | || ||||| | ||| ||| ||| Sbjct 55475 TGGAGCCGTGGCACGCCGACATACGCGCGTTCTTGGACATGAAAAAAAACACGGGCAACG 55534 Query 78411 AGGAAGCTCGATGCAGGGATTTATTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGA 78470 | | ||| |||||| | ||| ||| ||||| | ||||| | || ||||||| Sbjct 55535 ACTTGGAGCGAGCCAGGGACCTCTTCTTTGCGCTGTGGGTGCCGGACTTGTTCATGAAGA 55594 Query 78471 GAGTTGAGGAAGGAGGTAAATGGTCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAG 78530 | || || || | ||| | || |||| || | || | | ||| || || | Sbjct 55595 GGGTGGAATCCAACGGACAGTGGGCGCTGTTCTCACCCAACGAGGCAACGGGCCTGTCCG 55654 Query 78531 ATGTATACGGGGAAGAATTCGAAAAATTGTACACTAAATACGAAGAGGAAGG 78582 | || | || || | ||||||| | | ||||| || ||||| || || || Sbjct 55655 ACGTCCATGGCGAGGCATTCGAAGATCTATACACCAAGTACGAGGAAGAGGG 55706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657856380559040