Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq318 682 0.0 seq60 488 2e-133 >seq318 Length=132058 Score = 682 bits (756), Expect = 0.0 Identities = 734/971 (76%), Gaps = 0/971 (0%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | |||||||| || | || |||||||| || |||||||| || || | | Sbjct 95117 ACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACT 95058 Query 41315 GCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATC 41374 || || || ||| |||||||| ||| | | || || || || ||||||||||| ||| Sbjct 95057 GCAACTTCTGTTTTCATTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATC 94998 Query 41375 CGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTT 41434 || || || || |||| || || | || || ||||||||||| || || || || || Sbjct 94997 CGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTA 94938 Query 41435 CCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGAT 41494 || | ||| || ||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 94937 CCAACTTCTAACGCGATCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGAT 94878 Query 41495 GAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTC 41554 |||||||| |||||||| ||||| | |||||| | ||| | ||||||| || |||| || Sbjct 94877 GAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATC 94818 Query 41555 TTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATC 41614 | | |||||||| || || ||||||||| | || |||| ||| | || |||||| Sbjct 94817 TGCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATC 94758 Query 41615 TTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTT 41674 ||| || |||||||| || || || ||||| |||||||| ||| | | || || | Sbjct 94757 GCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATC 94698 Query 41675 GGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATG 41734 || || || ||||| || |||| |||||| | || || || || || ||||||| |||| Sbjct 94697 GGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATG 94638 Query 41735 CTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCC 41794 | || ||||| ||||||||||| || |||||||| || || |||||||| ||||| || Sbjct 94637 ATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCT 94578 Query 41795 GGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTC 41854 || || || ||||| ||||||||||||||||||||| || || || || || || Sbjct 94577 GGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTA 94518 Query 41855 ATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAA 41914 || ||||| || ||||| | | ||| ||| |||||||||||| ||||| || ||| Sbjct 94517 ATCCGTGAAACTACTGAGAACGAATCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAA 94458 Query 41915 GAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCT 41974 || |||||||| ||||| ||||||||||| || |||||||| || ||||||||||| ||| Sbjct 94457 GAAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCT 94398 Query 41975 AGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATT 42034 || || || || ||| |||||| ||||| || ||||| ||||| ||| | |||||| Sbjct 94397 TCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATT 94338 Query 42035 TGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAAC 42094 |||||| |||| ||||| | ||||| ||||| |||||| | || || |||||||| ||| Sbjct 94337 TGGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTCAAC 94278 Query 42095 CAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGT 42154 ||||| | | | | | | |||| || |||||||| |||| ||| ||| | |||||| Sbjct 94277 CAATCAGTAGTTGATTCACAAGGACGTGTTATCAACACTTGGGGTGATATTATCAACCGT 94218 Query 42155 GCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTT 42214 || |||||||| | || || ||||| ||||| ||||| ||||||||||| ||||||||| Sbjct 94217 GCTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTT 94158 Query 42215 GCATCCGTGGA 42225 || || || || Sbjct 94157 GCGTCAGTTGA 94147 >seq60 Length=599436 Score = 488 bits (540), Expect = 2e-133 Identities = 638/883 (72%), Gaps = 0/883 (0%) Strand=Plus/Minus Query 41322 CTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGAAC 41381 |||||| || ||||| ||| | | || || ||||| || || ||||| ||||| || | Sbjct 100508 CTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGC 100449 Query 41382 CCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCA 41441 | || ||||| || | || || |||||||||||||| || || || | || || Sbjct 100448 CTGTAGCTGGATCTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTT 100389 Query 41442 GTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGC 41501 || || ||||| | ||||||||||||||||||||||||||| || |||| || ||| Sbjct 100388 CAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGT 100329 Query 41502 TGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTT 41561 | |||||||| ||||| | |||| | | ||||||||| ||| | ||||| || | || Sbjct 100328 TATACAACGGTGGTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTT 100269 Query 41562 ACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTG 41621 ||||| || || |||||||||||||| || |||| ||| | || ||||| || || | Sbjct 100268 GGATGGGTCGTGAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAG 100209 Query 41622 CGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGG 41681 | | ||||||||| || || || || |||| || ||| | ||||| || | || || | Sbjct 100208 CATTCTCTGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAG 100149 Query 41682 GCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGT 41741 | ||| ||||||| |||||| || || || || || || || |||| |||| | || | Sbjct 100148 GTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTT 100089 Query 41742 TCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTAT 41801 |||| ||||| || || ||| | ||||| || || || ||| ||||| || || || | Sbjct 100088 TCCAAGCTGAACATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTT 100029 Query 41802 TTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCGTG 41861 | ||||| || ||| |||||||||||| | || || || | ||||||| Sbjct 100028 TCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTG 99969 Query 41862 AGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGACTT 41921 | || | |||| | || ||||| |||||||| || || ||||| ||||| |||| Sbjct 99968 AAACAAGCGAAGTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTT 99909 Query 41922 ACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTTTA 41981 |||| || || |||||||| || || |||||||| | || |||||||||||||| || | Sbjct 99908 ACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGCTAGTTTCA 99849 Query 41982 ATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTG 42041 | || || | | | |||||||| ||||| || |||||||| || || |||||||| Sbjct 99848 ACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAA 99789 Query 42042 CTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTC 42101 | || | || || ||| ||||| |||||||| || ||||| ||||| ||||||||| Sbjct 99788 CAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTG 99729 Query 42102 TGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACC 42161 | | | | ||| || | || || ||||| ||||||||||| |||||||||| | Sbjct 99728 TTGTTGATAGTGAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATT 99669 Query 42162 TTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCC 42204 | || | || || ||||| || || ||||| || |||||||| Sbjct 99668 TAGGTATGGAAGTAATGCACGAACGTAACGCTCATAACTTCCC 99626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146213129031328