Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020866.1 Length=40231 Score E Sequences producing significant alignments: (Bits) Value seq491 255 2e-63 seq2 82.4 2e-11 >seq491 Length=52141 Score = 255 bits (282), Expect = 2e-63 Identities = 287/383 (75%), Gaps = 32/383 (8%) Strand=Plus/Minus Query 39878 TGCTCTGC-CCCTGAGAACTGGGCCGCCTGAAGCTGGAGTTTTCCGC--TAAGTTTCCCT 39934 ||||||| ||| || |||||| || || |||||||||||||| ||| | | Sbjct 9387 TGCTCTGATCCCCGAAAACTGGATCGTCTTTGACTGGAGTTTTCCGCGCTAAAATCTC-- 9330 Query 39935 GGCTGGGAGA-GGAGCGGAATCGCATGAAGGCATCGAAGTTCACAGAGGCGCAGAAGGCG 39993 |||||||||| ||||||||| || |||| ||||||||| || |||| |||||||||||| Sbjct 9329 GGCTGGGAGAAGGAGCGGAAGCG-ATGAGGGCATCGAAATTTTCAGATGCGCAGAAGGCG 9271 Query 39994 TTCATCCTGAAGCAGGGCGAGGAAGGCACGCCGGTCGCAAAGATCTGCCGCAAGGCCGGG 40053 ||||| ||||||||||| || || ||| ||||| || |||||||||| ||||| || Sbjct 9270 TTCATTCTGAAGCAGGGAGACGACGGCGTTCCGGTTGCGGAGATCTGCCGGAAGGCGGGT 9211 Query 40054 ATCAGCTAGGCGGCCTACTTCAACTGGAAGAAG-----------------------CGAT 40090 |||||| ||||| | |||||||||||||| ||| ||| Sbjct 9210 ATCAGCCAGGCGACGTACTTCAACTGGAAAAAGAAGTATGCGGGTTTGTTGCCCGACGAG 9151 Query 40091 AT--GGCGGCTAAAGCAGCTTGAGGACGAGAATGCCCGACTGAAGAAGATCGTGGCCGAC 40148 || | ||||||||||| || |||||| |||| || || ||||||||||||| ||| Sbjct 9150 ATGCGTCGGCTAAAGCAACTCGAGGACAAGAACAATCGGCTCAAGAAGATCGTGGTGGAC 9091 Query 40149 CTGACGCTCGACCGCGAGATGTTGAAGGACGTCATCCGCCGAAAACTCTGAGGCCTTTCC 40208 ||||| | |||||||||||| | | || ||||| |||||||||||||||||||| ||| Sbjct 9090 CTGACATTGGACCGCGAGATGCTTCAAGATGTCATTCGCCGAAAACTCTGAGGCCTGTCC 9031 Query 40209 GGAAGCGACAGCTCGTCGACGGG 40231 ||||||| |||| || |||||| Sbjct 9030 GGAAGCGTAAGCTTGTTGACGGG 9008 >seq2 Length=6328565 Score = 82.4 bits (90), Expect = 2e-11 Identities = 48/50 (96%), Gaps = 0/50 (0%) Strand=Plus/Plus Query 133 GATTGAAAATCCGCGTGTCGGTGGTTCGAATCCGCCTCCGGGCACCACTT 182 ||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1645586 GATTGAAAATCCGCGTGTCGGTGGTTCGATTCCGCCTCTGGGCACCACTT 1645635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128616481991512