Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq318 700 0.0 seq60 495 1e-135 >seq318 Length=132058 Score = 700 bits (776), Expect = 0.0 Identities = 745/976 (76%), Gaps = 10/976 (1%) Strand=Plus/Minus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | |||||||| || | || ||||| ||||| || ||||| || ||| | || Sbjct 95117 ACTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACT 95058 Query 42370 GCTACCACCTGTTTT-ATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCAT 42428 || || | |||||| ||| ||||||| || ||||| ||||| || ||||| ||||| || Sbjct 95057 GCAACTTC-TGTTTTCATTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTAT 94999 Query 42429 TCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGT 42488 ||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || || Sbjct 94998 CCGTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGT 94939 Query 42489 GCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGA 42548 || | |||||| || || ||||| || || | || |||||||| | | ||||| Sbjct 94938 ACCAACTTCTAACGCGATCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGA 94879 Query 42549 CGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTAT 42608 |||||||| ||||| || || ||||| || || |||| | ||||||| | | || || Sbjct 94878 TGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAAT 94819 Query 42609 CTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGAT 42668 || ||| ||| |||| || |||||||||||||| | ||| | || ||| | || ||||| Sbjct 94818 CTGCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGAT 94759 Query 42669 CTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATT 42728 | ||| ||||||||||| || || || || || ||||| || ||| | |||| ||| | Sbjct 94758 CGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAAT 94699 Query 42729 TGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCAT 42788 || ||||||||||| |||||||| ||||||||||| || || ||||| ||||||||||| Sbjct 94698 CGGTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCAT 94639 Query 42789 GTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGC 42848 | | || ||||| ||||| || ||||| |||||||| || ||||| ||||| |||||||| Sbjct 94638 GATCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGC 94579 Query 42849 CGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCT 42908 || || || ||||| || |||||||| |||||||| ||| || || || || ||||| Sbjct 94578 TGGTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCT 94519 Query 42909 TGTGCGTGAAACGACTGAAAACGAA--AGCCAAAATTATGGCTACAAGTTCGGTCAAGAG 42966 | |||||||| ||||| |||||| ||| || ||| |||||||||||||| || Sbjct 94518 AATCCGTGAAACTACTGAGAACGAATCAGC--TAACGCTGGTTACAAGTTCGGTCAGGAA 94461 Query 42967 GAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATAT 43026 || || ||||| |||||||| || || || ||||||||||| || || ||||||||||| Sbjct 94460 GAAGAAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATAC 94401 Query 43027 GCGTCGTTTAATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG 43086 || || || || || ||| ||| | |||||||| || || |||||||| ||| | || Sbjct 94400 GCTTCTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGT 94341 Query 43087 ATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTT 43146 |||||||| ||| ||||||| | ||||||||| || ||| | || || || ||||| Sbjct 94340 ATTTGGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTC 94281 Query 43147 AACCAATCACTTGTTGATAATCAGAA--TCATGTCATCCCTACTTGGGCTGATATTTTGA 43204 ||||||||| | |||||| ||| || | ||| ||| ||||||| ||||||| | | Sbjct 94280 AACCAATCAGTAGTTGAT--TCACAAGGACGTGTTATCAACACTTGGGGTGATATTATCA 94223 Query 43205 ATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTG 43264 | ||||| |||||||| | || || ||||||||||| || || || |||||||| |||| Sbjct 94222 ACCGTGCTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTG 94163 Query 43265 ATCTTGCATCCGTGGA 43280 | ||||| || || || Sbjct 94162 ACCTTGCGTCAGTTGA 94147 >seq60 Length=599436 Score = 495 bits (548), Expect = 1e-135 Identities = 675/939 (72%), Gaps = 5/939 (1%) Strand=Plus/Minus Query 42389 TCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCT 42448 ||||||| || || || || || ||||| |||||||| || ||||| ||||| |||| | Sbjct 100496 TCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGCCTGTAGCTGGAT 100437 Query 42449 CTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTG 42508 || | | || || |||||||||||| |||||| || | ||||| |||||||| | Sbjct 100436 CTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTTCAAACGCAATCG 100377 Query 42509 GACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCG 42568 | | || || || | || |||||||| | | |||| || ||| | ||||| || | Sbjct 100376 GTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGTTATACAACGGTG 100317 Query 42569 GACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCG 42628 | ||||| || | |||| ||||| ||| | || ||| | | || |||| || | Sbjct 100316 GTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGGTCGTG 100257 Query 42629 AATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCC 42688 ||||||||||| ||||| | || ||| | || ||||| || || || | |||||| | Sbjct 100256 AATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTCTCTGCTC 100197 Query 42689 CTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAG 42748 | || || ||||| ||||||| ||| | || || || | || |||||| ||| || | Sbjct 100196 CAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGTTTCTCTG 100137 Query 42749 ATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAAC 42808 |||| ||||| | || ||||| |||||||| ||||||||| | || ||||| ||||||| Sbjct 100136 ATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTTTCCAAGCTGAAC 100077 Query 42809 ATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGT 42868 |||||||| | ||||| || ||||||||| ||||||||| || || || ||||| || | Sbjct 100076 ATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCAT 100017 Query 42869 TGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAA 42928 | ||| |||||||| || | | || || || | | | |||||||| | ||| Sbjct 100016 TATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAGCGAAG 99957 Query 42929 ACGAAAGCCAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTG 42988 ||| || || || ||||| ||||| ||||| || || ||||| ||||| || | Sbjct 99956 TTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACATCGTAG 99897 Query 42989 CAGCGCATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGC 43047 | || |||||||||||||| || | || ||||||||||| | |||| || || | | Sbjct 99896 CTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGC-TAGTTTCAACAACTCTAGA 99838 Query 43048 TCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGC 43107 |||| || ||||| ||||| || ||||| || || ||||||||||| || || | || Sbjct 99837 GCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAACAGCTTTAGGT 99778 Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAAT 43167 || ||||||||||| || ||||| || ||||||||||| |||||||| ||||||||| | Sbjct 99777 GTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGATAGT 99718 Query 43168 CAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAG 43227 | || ||| || || |||||||| || | || ||||| | | || | || Sbjct 99717 GAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATTTAGGTATGGAA 99658 Query 43228 GTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTTACT 43287 || |||||||| || || || ||||||||||| | ||| | ||||| ||| || Sbjct 99657 GTAATGCACGAACGTAACGCTCATAACTTCCCATTAGATTTAGCATCTAACGAGATTTTA 99598 Query 43288 CCCGTGGCACTTACTGCTCCTTCTATT---GGTTAATTA 43323 || || || || |||| ||||||||| ||||||||| Sbjct 99597 CCTGTTGCGATTTCTGCACCTTCTATTGTAGGTTAATTA 99559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143531552341136