Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq318 542 8e-150 seq60 509 5e-140 >seq318 Length=132058 Score = 542 bits (600), Expect = 8e-150 Identities = 719/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 25873 TGATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAG 25932 ||| || | ||||||||| ||||| ||||| |||||||||||||||||||| | || || Sbjct 94152 TGACGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCAAG 94211 Query 25933 GTTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTAC 25992 |||||| ||||| | | |||| |||| || || | ||| | ||| ||||| Sbjct 94212 GTTAGCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCAACTAC 94271 Query 25993 TGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGT 26052 ||| ||||| ||||| || || |||||||| |||||||| || | ||||| | || || Sbjct 94272 TGATTGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGAGCAGT 94331 Query 26053 CAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT 26112 | ||| || || | ||| ||||||| ||| || ||||| ||||||||||| ||| || Sbjct 94332 AAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAGTTGTT 94391 Query 26113 AAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATA 26172 ||| || || || || |||| | |||||||| ||||| ||||| ||||| || || Sbjct 94392 GAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATGTTGTA 94451 Query 26173 TGTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTC 26232 || ||||| || || || ||||| || ||| || ||| | | ||| || ||||| Sbjct 94452 AGTTTCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTAGTTTC 94511 Query 26233 TGCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAA 26292 || || || |||||||| | ||||||||||||| ||| | | |||||||| Sbjct 94512 ACGGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCACCGAA 94571 Query 26293 AACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAA 26352 ||| ||||||||||| ||| |||||||||||||| || || || || || |||||||| Sbjct 94572 AACACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAA 94631 Query 26353 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCC 26412 ||||| ||| ||||| || ||||||||||||||||||||||| ||||| ||| || Sbjct 94632 TACGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAAGAACC 94691 Query 26413 TTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGC 26472 ||| |||| || || | | ||| || || ||| || | | |||||| | || || Sbjct 94692 TTGACCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGC 94751 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTC--TCCCTGCA 26530 ||| ||||| || | ||| |||| | | |||| |||||||| | | || || | Sbjct 94752 TACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCCATGTA 94811 Query 26531 TATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 | || | | ||| | ||||||||| | | || ||||| || || || || ||||| Sbjct 94812 TGAGCAG--ATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTGTAA 94869 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 ||||| || || || | |||||||||| || ||||| || ||||| ||||| |||||| Sbjct 94870 AGCCATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCGTTA 94929 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || | || || || || || || || || ||||||||||| | | || || || || Sbjct 94930 GAAGTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGATACA 94989 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTAT-AAAACA 26769 |||||||| || ||||| || || || || || || ||||| || || | || |||||| Sbjct 94990 GGCTCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAAACA 95049 Query 26770 TGTAGTGGCTGCGAGTA-AGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGAC 26828 | ||| || | | || || |||| |||||||| || |||||||| || | || |||| Sbjct 95050 -GAAGTTGCAGTTAATAGAGTAGGG-ATCATAAGAACACCGAACCAACCGATGTATAGAC 95107 Query 26829 GGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 |||||||||| ||||||| ||| ||||| || Sbjct 95108 GGTTCTCAGTGCTTGTAATCCATTCACAGAA 95138 >seq60 Length=599436 Score = 509 bits (564), Expect = 5e-140 Identities = 708/982 (72%), Gaps = 10/982 (1%) Strand=Plus/Plus Query 25874 GATGCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGG 25933 |||||||| || | ||| ||||||||||| ||||| |||||||| ||||| | || | Sbjct 99611 GATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAAA 99670 Query 25934 TTAGCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACT 25993 | || ||||| | | ||||||||||| ||| | || | | ||| || || Sbjct 99671 TCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAACA 99730 Query 25994 GACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTC 26053 || ||||| ||||||||||| |||| ||| |||||||| || | | ||| | || ||| Sbjct 99731 GATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTGTT 99790 Query 26054 AGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTA 26113 | ||| || ||||| || ||||| | ||||| |||||||| | || | ||| || Sbjct 99791 AACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGTTG 99850 Query 26114 AAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATAT 26173 ||||| ||||| || |||||||| | |||||||| || || ||||| || || || || Sbjct 99851 AAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAA 99910 Query 26174 GTCTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCT 26233 || ||||| ||||| || || || || || || || || | | || | ||||| Sbjct 99911 GTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGTTTCA 99970 Query 26234 GCAATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAA 26293 ||| | ||||| || ||| ||||||||||||| ||| | | ||||||||| Sbjct 99971 CGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACCGAAA 100030 Query 26294 ACCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAAT 26353 || |||||||||||||||||||||||||||||||| | || |||||||| |||||||| Sbjct 100031 ACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTGGAAA 100090 Query 26354 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCT 26413 |||| ||| |||||||| |||||||| ||||| | ||||| |||||| ||||| ||| Sbjct 100091 ACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACTACCT 100150 Query 26414 TGTCCGAAAGGATAAACTAAGAACACTGCGAGA-GCTGCGGATAGTGGTGCTGTATATGC 26472 || |||| ||| ||||||||||| ||||| ||| ||||| | || ||| || | |||| Sbjct 100151 TGACCGATAGGGTAAACTAAGAATACTGC-AGATGCTGCTGCTACTGGAGCAGAGAATGC 100209 Query 26473 AACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCAT- 26531 || || ||||| || | ||| |||| | ||| |||||||| | | || ||| Sbjct 100210 TACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACC--CATC 100267 Query 26532 -ATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTAT 26590 | || || || |||||||| ||||| | || | ||| || || || || |||||| Sbjct 100268 CAACAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTAT 100327 Query 26591 AGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTA 26650 | |||||| || | || |||||||||| || ||||| || || | ||||||||||| Sbjct 100328 AACCACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTT 100387 Query 26651 GAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACT 26710 || || | || || || || || ||||| ||||| | ||| || || | || Sbjct 100388 GAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTACA 100447 Query 26711 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACAT 26770 |||||||| || ||||| |||||||||||||| |||||||| || || | || |||| Sbjct 100448 GGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAA 100507 Query 26771 GTAGTGGCTGCGAGTAA-GCAGGGTATCA-TAAGCACCCCGAACCATCCCACATAGAGAC 26828 | || |||| | ||| | |||| |||| ||| || || ||||| || | || | || Sbjct 100508 GAAGCTGCTGTTAATAACGTAGGG-ATCATTAAACA-ACCAAACCAACCAATGTATAAAC 100565 Query 26829 GGTTCTCAGTACTTGTAACCCA 26850 | || |||||||| |||| ||| Sbjct 100566 GATTTTCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147710716013440