Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq318 841 0.0 seq60 677 0.0 >seq318 Length=132058 Score = 841 bits (932), Expect = 0.0 Identities = 763/961 (79%), Gaps = 0/961 (0%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || ||||||||||||||||||||||||||||| || | ||| Sbjct 95116 CTGAGAACCGTCTATACATCGGTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACTG 95057 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | |||||| |||| || || ||||| ||||| || ||||| |||||||| | Sbjct 95056 CAACTTCTGTTTTCATTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATCC 94997 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 |||| || || |||||||| | | || || |||||||||||||||||||||||||| | Sbjct 94996 GTGAGCCTGTATCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTAC 94937 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 | | ||| ||||| || ||||| |||||||| || ||||||||||| || ||||||||| Sbjct 94936 CAACTTCTAACGCGATCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGATG 94877 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||| | ||||| |||||||||| |||||| | || | ||||||| | | |||||| Sbjct 94876 AATGGCTTTACAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATCT 94817 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 ||||| |||||| | ||||||||||||| |||| | || ||||||||||||||| Sbjct 94816 GCTCATACATGGGTCGTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCG 94757 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||| || |||||||||||||| | ||||| ||||||||| | | || || ||| Sbjct 94756 CTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATCG 94697 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 |||||||||||||||| |||| ||||||||||||||||||||||| || |||| ||| Sbjct 94696 GTCAAGGTTCTTTCTCAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATGA 94637 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 |||| |||||||| || ||||| |||||||||||||| ||||||||||| || || || | Sbjct 94636 TCGTATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCTG 94577 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| |||||||| || | ||||||||||||||||||||| | || || || || |||| Sbjct 94576 GTGTTTTCGGTGGTTCATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTAA 94517 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 ||||||||||||||||| | || || ||| ||||||||||||||| || ||||||| Sbjct 94516 TCCGTGAAACTACTGAGAACGAATCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAAG 94457 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 ||||||| |||||||| |||||||| || ||||| |||||||| |||||||| || || | Sbjct 94456 AAACTTACAACATTGTAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTT 94397 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 | ||||||||||| | ||||||||||||||| ||||| ||||| || || | || | Sbjct 94396 CTTTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTT 94337 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||||| | ||| | || || |||||||||||||| ||||| ||||||||||||| Sbjct 94336 GGTTTACTGCTCTTGGTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTCAACC 94277 Query 155831 AGTCTGTAGTAGACGCTAGTGGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCG 155890 | || ||||| || | || || ||| || |||| || ||| | ||||| | Sbjct 94276 AATCAGTAGTTGATTCACAAGGACGTGTTATCAACACTTGGGGTGATATTATCAACCGTG 94217 Query 155891 CTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTG 155950 || |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 94216 CTAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTG 94157 Query 155951 C 155951 | Sbjct 94156 C 94156 >seq60 Length=599436 Score = 677 bits (750), Expect = 0.0 Identities = 762/1017 (75%), Gaps = 12/1017 (1%) Strand=Plus/Minus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| | ||| | |||| || || | || | |||||||| ||| | | ||||||||| Sbjct 100587 TGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTGGTTGTTTAATGATCCCT 100528 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 | | | || ||| | || | ||| |||| || || || || || |||||||| Sbjct 100527 ACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAGAT 100468 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 ||||||||||| ||||| || || ||||| |||||| | || ||||||||||||||| | Sbjct 100467 ATTGATGGTATCCGTGAGCCTGTAGCTGGATCTTTATTATACGGTAACAACATCATCAGT 100408 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCA 155217 ||||||||| | ||||||||||||||||| ||| | |||||||| || ||||||||||| Sbjct 100407 GGTGCTGTTATACCTAGTTCAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAGCT 100348 Query 155218 GCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTC 155277 || | |||| |||||||| ||||| |||||||||| |||| | | || ||||| ||| Sbjct 100347 GCTTCAATTGAAGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATTTC 100288 Query 155278 CTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGC 155334 | || || | || | || |||||| | ||||||||| |||||| | || Sbjct 100287 TTAATTGGTGTT---GCTTGTTGGATGGGTCGTGAATGGGAACTTAGCTACCGTTTAGGT 100231 Query 155335 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTC 155394 |||||||||||||| | || |||| |||||| |||||| | || || | || |||||| Sbjct 100230 ATGCGTCCTTGGATTTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCATCTGCAGTATTC 100171 Query 155395 CTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGT 155454 | ||||| ||| ||||||||||| ||||||||||| ||||| | ||||| |||||| Sbjct 100170 TTAGTTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTGGT 100111 Query 155455 ACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCAC 155514 || ||||||| ||| |||| |||||||| ||||| || || | |||||||| ||||| Sbjct 100110 ACGTTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCCATTCCAT 100051 Query 155515 ATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTG 155574 ||| ||| || || ||||| |||||||| || | ||| |||||||||||| || || Sbjct 100050 ATGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTA 99991 Query 155575 GTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAG 155634 || || || |||| |||||||| | || || ||| ||||| |||||||| Sbjct 99990 GTAACTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGTTACAAA 99931 Query 155635 TTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTT 155694 ||||||||||||||||||||||| ||||| || ||||||||||| ||||| |||||| | Sbjct 99930 TTCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTA 99871 Query 155695 ATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGG 155754 || ||||| ||||| ||||||||||| ||| | | || ||||||||||| |||||| Sbjct 99870 ATTTTCCAATATGCTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGG 99811 Query 155755 CCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAAC 155814 ||||| || | || ||| ||| ||| | ||||| || |||||||||||| | ||| Sbjct 99810 CCTGTAGTTGGGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAAC 99751 Query 155815 GGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGG 155871 ||||| ||||||||||| ||||| || || |||| ||| || || |||||| Sbjct 99750 GGTTTTAACTTCAACCAATCTGTTGTTGA---TAGTGAAGGTCGTGTTATAAACACATGG 99694 Query 155872 GCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCAC 155931 || ||||| ||||||| || | | | |||||||||||||||||||| ||||||||||| Sbjct 99693 GCTGACATCATTAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCAT 99634 Query 155932 AACTTCCCTCTTGACCTTGCTGCTGCTGAGTCAGTGCCTGTTGCACTTACTGCACCT 155988 |||||||| | || | || || ||| | |||||||| || |||||||| Sbjct 99633 AACTTCCCATTAGATTTAGCATCTAACGAGATTTTACCTGTTGCGATTTCTGCACCT 99577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584829848757920