Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq318 639 4e-179 seq60 572 5e-159 >seq318 Length=132058 Score = 639 bits (708), Expect = 4e-179 Identities = 737/992 (74%), Gaps = 0/992 (0%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| | || || | ||| || || |||||||||||||||||||||||||| ||||||||| Sbjct 94147 TCAACTGACGCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATA 94206 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || || | | ||| | || |||| ||||||| || || || | | || Sbjct 94207 CCAAGGTTAGCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCA 94266 Query 40644 ACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATG 40703 |||||||| ||||| ||||| || || || ||||| || ||||||||||| ||||| | Sbjct 94267 ACTACTGATTGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGA 94326 Query 40704 GAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTA 40763 | |||| ||| || || ||||| || ||||| | || |||||||| || | ||| Sbjct 94327 GCAGTAAACCAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAG 94386 Query 40764 TTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATG 40823 |||||||| ||||| ||||| || ||||| | ||||||||||||||| |||||||| ||| Sbjct 94387 TTGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATG 94446 Query 40824 TTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTG 40883 || ||||| || |||||||||| ||||| || || ||| |||||| | || || Sbjct 94447 TTGTAAGTTTCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTA 94506 Query 40884 GTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 || || || || | || |||||||| || ||||||||||||| ||||| | |||| Sbjct 94507 GTTTCACGGATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCA 94566 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || ||||| || ||||| |||||||||||||| || |||||||| || ||| Sbjct 94567 CCGAAAACACCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCT 94626 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| || | ||||||||||||||| ||| ||| || | |||||||||||| |||||| Sbjct 94627 TGGAATACGATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAA 94686 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 ||||| ||||||| ||| || | | ||||||||| ||| |||| | ||| || | | Sbjct 94687 GAACCTTGACCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAG 94746 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 || || ||| ||||| || | |||||||| | | | ||||||||||| | | ||| Sbjct 94747 TAAGCTACAGCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCC 94806 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 ||||| | ||| | || ||||| | || || ||||| || || || |||||| Sbjct 94807 ATGTATGAGCAGATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTG 94866 Query 41244 TATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 || ||||| || || || | | |||||||| ||||||||||| ||||| ||||| ||| Sbjct 94867 TAAAGCCATTCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCG 94926 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||||| | || || ||||| ||||| || || ||||| ||||| | | || || || Sbjct 94927 TTAGAAGTTGGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGAT 94986 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAA 41423 || |||||||| || ||||| || || || || || || |||||||| ||||| |||||| Sbjct 94987 ACAGGCTCACGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAA 95046 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 | || ||||||| || | || ||||| || ||||| |||||||| | |||||| Sbjct 95047 ACAGAAGTTGCAGTTAATAGAGTAGGGATCATAAGAACACCGAACCAACCGATGTATAGA 95106 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||| | ||| || Sbjct 95107 CGGTTCTCAGTGCTTGTAATCCATTCACAGAA 95138 >seq60 Length=599436 Score = 572 bits (634), Expect = 5e-159 Identities = 718/980 (73%), Gaps = 4/980 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 ||| ||||| |||| || ||||| ||||||||||| |||||||||||||||||||||| Sbjct 99610 AGATGCTAAATCTAATGGGAAGTTATGAGCGTTACGTTCGTGCATTACTTCCATACCTAA 99669 Query 40589 ACTCTGT-CTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | |||| | ||||| | |||||||| || || || ||| | | || || | Sbjct 99670 A-TCTGCACGGTTAATGATGTCAGCCCATGTGTTTATAACACGACCTTCACTATCAACAA 99728 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| ||||||||||| || | ||| || ||||||||| || ||| | | | Sbjct 99729 CAGATTGGTTGAAGTTAAAACCGTTTAAGTTGAATGCCATAGTACTTACACCTAAAGCTG 99788 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || |||| || || | || |||| ||||| |||| || | |||| Sbjct 99789 TTAACCAAATCCCAACTACAGGCCATGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGT 99848 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 |||| ||||||||| || |||| | |||||||||||| || |||||||||||||| | Sbjct 99849 TGAAACTAGCATATTGGAAAATTAAACGACCAAAGTAACCATGAGCAGCTACGATGTTGT 99908 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || |||| || || || || || |||||||| |||||| ||| | || | Sbjct 99909 AAGTTTCTTCTTCTTGTCCGAATTTGTAACCGTAGTTAACAGATTCAACTTCGCTTGTTT 99968 Query 40888 CCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAA 40947 | ||||| | ||||| || | ||||||||||||| || || | |||||| | Sbjct 99969 CACGAATTAAACTTGAAGTTACTAAAGATCCGTGCATAGCACTGAATAATGAACCACCGA 100028 Query 40948 AGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGA 41007 | || || ||||| || |||||||||||||||||| | |||||| ||||| ||||||| Sbjct 100029 AAACACCAGCAACACCAGCCATATGGAATGGGTGCATTAAAATGTTATGTTCAGCTTGGA 100088 Query 41008 AGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAAC 41067 | || | ||||||||| || || ||| || ||||| |||||||||||||||||| || Sbjct 100089 AAACGATCATGAAGTTAAACGTACCAGAAATACCTAATGGCATACCATCAGAGAAACTAC 100148 Query 41068 CCTGACCGAATGGATAAACTAAGAATACAGCTAGA-GCTGCTGACAATGGAGCTGTGTAT 41126 | ||||||| || |||||||||||||| || ||| ||||||| | |||||| | | || Sbjct 100149 CTTGACCGATAGGGTAAACTAAGAATACTGC-AGATGCTGCTGCTACTGGAGCAGAGAAT 100207 Query 41127 GCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCG 41186 || || || ||||| || | |||||||| | ||| ||||||||| | | ||| Sbjct 100208 GCTACGAAAATCCAAGGACGCATACCTAAACGGTAGCTAAGTTCCCATTCACGACCCATC 100267 Query 41187 TATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTAT 41246 | || || || ||||| || || || || || | ||| || || || ||||||||| Sbjct 100268 CAACAAGCAACACCAATTAAGAAATGGAATACGATTAATTGGTAAGGACCACCGTTGTAT 100327 Query 41247 AGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTA 41306 | |||||| || | || | |||||||| ||||||||||| || | ||||||||||| Sbjct 100328 AACCACTCTTCAATTGAAGCAGCTTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTT 100387 Query 41307 GAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACG 41366 || || || | ||||| ||| || || ||||| ||||| | ||| || || | || Sbjct 100388 GAACTAGGTATAACAGCACCACTGATGATGTTGTTACCGTATAATAAAGATCCAGCTACA 100447 Query 41367 GGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACAT 41426 |||||||| || ||||| |||||||||||||| ||||||||||| ||||| ||| |||| Sbjct 100448 GGCTCACGGATACCATCAATATCTACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAA 100507 Query 41427 GTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGG 41486 | | || |||| ||| | || ||||||| |||||||||||| | ||||| || Sbjct 100508 GAAGCTGCTGTTAATAACGTAGGGATCATTAAACAACCAAACCAACCAATGTATAAACGA 100567 Query 41487 TTGTCGGTGCTAGTGACCCA 41506 || || || ||||| | ||| Sbjct 100568 TTTTCAGTACTAGTAATCCA 100587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143701150866888