Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq318 780 0.0 seq60 697 0.0 >seq318 Length=132058 Score = 780 bits (864), Expect = 0.0 Identities = 741/944 (78%), Gaps = 6/944 (1%) Strand=Plus/Plus Query 67362 GCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCT 67421 ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 94156 GCAAGGTCAAGTGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATACCAAGGTTA 94215 Query 67422 GCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGTCAACGACGGAT 67481 || | ||| | || || ||||||| || || || || ||||| || ||| Sbjct 94216 GCACGGTTGATAATATCACCCCAAGTGTTGATAACACGTCCTTGTGAATCAACTACTGAT 94275 Query 67482 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAAC 67541 |||||||||||||| ||||| ||||||||||||||||| || | ||| | ||||| ||| Sbjct 94276 TGGTTGAAGTTGAATCCGTTTAGGTTGAATGCCATAGTAGAAATACCAAGAGCAGTAAAC 94335 Query 67542 CAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAA 67601 || || | || || || | ||||| ||||||||||||||| | |||||||||||| Sbjct 94336 CAAATACCGATAACTGGCCAAGCAGCTAGGAAGAAGTGAAGAGAACGAGAGTTGTTGAAA 94395 Query 67602 GATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTC 67661 || || || |||||||| | ||||| ||||| || |||||||| |||||||||||||| Sbjct 94396 GAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAGCTACAATGTTGTAAGTT 94455 Query 67662 TCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTG 67721 |||||||| || |||||||||||||| ||| ||| || | |||||||||||| | | Sbjct 94456 TCTTCTTCCTGACCGAACTTGTAACCAGCGTTAGCTGATTCGTTCTCAGTAGTTTCACGG 94515 Query 67722 ATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACA 67781 || ||||| |||||||| || ||||||||||||||| || | |||||||||||| ||| Sbjct 94516 ATTAGAGATGAAGTAACTAGTGAACCGTGCATAGCAGAGAACAATGAACCACCGAAAACA 94575 Query 67782 CCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACG 67841 || || || || ||||| ||||||||||||||||||||||||||||| |||||||| ||| Sbjct 94576 CCAGCAACACCTAGCATGTGGAATGGGTGCATAAGGATGTTGTGCTCAGCTTGGAATACG 94635 Query 67842 AACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGA 67901 | |||| |||| || |||||||| |||||||||||||| | || ||||||||||||||| Sbjct 94636 ATCATGAAGTTGAATGTACCAGAGATACCAAGAGGCATACCATCTGAGAAAGAACCTTGA 94695 Query 67902 CCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACA 67961 |||| || |||| | ||| ||||| || || | ||||| |||||||| |||||| Sbjct 94696 CCGATTGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACA 94755 Query 67962 CAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAGTATGCT 68021 |||||||||||||||||| | |||| ||||||||||||| | |||||| ||||| Sbjct 94756 GCGATCCAAGGACGCATACCTAAACGGAAAGAAAGTTCCCATTCACGACCCATGTATGAG 94815 Query 68022 GTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCAC 68081 |||||| | | ||||||| | || | |||||| |||| ||||| || || | ||| Sbjct 94816 CAGATTCCAAGGAAGAAGTGGCAAACGATTAGTTGGTAAGGACCACCGTTGTAAAGCCAT 94875 Query 68082 TCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTA 68141 ||||| |||| || |||||||| || || |||||||| |||||||| ||||| ||| | Sbjct 94876 TCATCAAGAGAAGCAGCTTCCCAAATTGGGTAGAAGTGTAGACCGATCGCGTTAGAAGTT 94935 Query 68142 GGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCT 68201 || |||||||||||||| ||||||||||| ||||| | || ||||| | ||||| || Sbjct 94936 GGTACAACAGCACCAGAGATGATGTTGTTTCCGTAAAGAAGAGAACCAGATACAGGCTCA 94995 Query 68202 CTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAGTT 68258 | |||||||||||| || |||||||| || || || || || || ||||| ||||| Sbjct 94996 CGGATACCATCGATGTCCACTGGAGGAGCAGCGATAAAAGCGATAATGAAAACAGAAGTT 95055 Query 68259 GCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | | || || ||| ||||| | |||||||||||||| Sbjct 95056 GCAGTTAATAG--AG-TAGGGATCATAAGAACACCGAACCAACC 95096 Score = 82.4 bits (90), Expect = 9e-11 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Minus Query 39356 AGTAGGAGTGGGGGGACTTGAACCCCCACGACTCAA---GGTCAACAGATTTTAAGTCTG 39412 ||| || ||| ||||||||||||| ||||| |||| | ||||| ||||||||||| | Sbjct 17514 AGTGGGGATGGAGGGACTTGAACCCTCACGA-TCAATAAGATCAACGGATTTTAAGTCCG 17456 Query 39413 GTGCGTCTACCGATTCCGCCACACTCCC 39440 |||||||||| ||||||||||| |||| Sbjct 17455 TTGCGTCTACCAATTCCGCCACA-TCCC 17429 >seq60 Length=599436 Score = 697 bits (772), Expect = 0.0 Identities = 758/1003 (76%), Gaps = 12/1003 (1%) Strand=Plus/Plus Query 67325 AGGTGCAGTAAGTGCAACAGGCACAGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTG 67384 |||||||| || |||||||| | | ||| || || | || | |||||||| || Sbjct 99577 AGGTGCAGAAATCGCAACAGGTAAAATCTCGTTAGATGCTAAATCTAATGGGAAGTTATG 99636 Query 67385 AGCGTTACGCTCGTGCATAACTTCCATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCA 67444 ||||||||| |||||||| |||||||| || | |||| | ||||| |||||| ||||| Sbjct 99637 AGCGTTACGTTCGTGCATTACTTCCATACCTAAATCTGCACGGTTAATGATGTCAGCCCA 99696 Query 67445 AGTAGGAATCACTTTACCACCTGCG---TCAACGACGGATTGGTTGAAGTTGAAACCGTT 67501 || || || || |||| | ||||| || |||||||||||||| |||||||| Sbjct 99697 TGTGTTTATAAC---ACGACCTTCACTATCAACAACAGATTGGTTGAAGTTAAAACCGTT 99753 Query 67502 GAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCACAGGGAA 67561 | ||||||||||||||| ||||| | || || ||||| || | || ||||| | Sbjct 99754 TAAGTTGAATGCCATAGTACTTACACCTAAAGCTGTTAACCAAATCCCAACTACAGGCCA 99813 Query 67562 TGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAA 67621 ||| ||||||||||| || | | ||| |||||||||||| ||||| ||||| || || Sbjct 99814 TGCTGCAAGGAAGAAATGTAAAGCTCTAGAGTTGTTGAAACTAGCATATTGGAAAATTAA 99873 Query 67622 GCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTT 67681 ||||| ||||| ||||||||||| || ||||||||||| ||||||||||||||||| || Sbjct 99874 ACGACCAAAGTAACCATGAGCAGCTACGATGTTGTAAGTTTCTTCTTCTTGTCCGAATTT 99933 Query 67682 GTAACCGTAGTTCTGTGACTCTTGCTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAG 67741 |||||||||||| || || || | ||||| | || | | ||||| || | Sbjct 99934 GTAACCGTAGTTAACAGATTCAACTTCGCTTGTTTCACGAATTAAACTTGAAGTTACTAA 99993 Query 67742 AGAACCGTGCATAGCACTAAAGAGTGAACCACCGAATACACCTGCTACTCCAAGCATATG 67801 ||| |||||||||||||| || | |||||||||||| ||||| || || ||| |||||| Sbjct 99994 AGATCCGTGCATAGCACTGAATAATGAACCACCGAAAACACCAGCAACACCAGCCATATG 100053 Query 67802 GAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGTACC 67861 |||||||||||| | ||||| || || |||||||| |||| |||| ||||||| ||||| Sbjct 100054 GAATGGGTGCATTAAAATGTTATGTTCAGCTTGGAAAACGATCATGAAGTTAAACGTACC 100113 Query 67862 AGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAA 67921 ||||||||| | ||||| | ||||||||| ||||||||||| ||| || || ||||| Sbjct 100114 AGAAATACCTAATGGCATACCATCAGAGAAACTACCTTGACCGATAGGGTAAACTAAGAA 100173 Query 67922 CACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACC 67981 || || ||||||| | |||||||||||| ||||||| | ||||||||||||||||| Sbjct 100174 TACTGCAGATGCTGCTGCTACTGGAGCAGAGAATGCTACGAAAATCCAAGGACGCATACC 100233 Query 67982 AAGACGGTAAGAAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAA 68038 | |||||| ||||||||| | |||||| || | || | || || | ||| Sbjct 100234 TAAACGGTAGCTAAGTTCCCATTCACGACCCATCCAACAAGC---AACACCAATTAAGAA 100290 Query 68039 GTGGAAGACTACAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGC 68098 ||||| || | | |||| |||| ||||| || || |||||||| || | | || || Sbjct 100291 ATGGAATACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCTTCAATTGAAGCAGC 100350 Query 68099 TTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGA 68158 |||||| || || |||||||||| ||||||||||||||||||||| | |||||||||| Sbjct 100351 TTCCCAAATTGGGTAGAAGTGAATACCGATTGCGTTTGAACTAGGTATAACAGCACCACT 100410 Query 68159 AATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATC 68218 ||||||||||||||||| | | || || || ||||| || | ||||||||| ||||| Sbjct 100411 GATGATGTTGTTACCGTATAATAAAGATCCAGCTACAGGCTCACGGATACCATCAATATC 100470 Query 68219 AACTGGAGGTGCTGCAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGG 68278 || || || ||||| || || || |||||| | |||| ||||||| | || ||| Sbjct 100471 TACAGGCGGAGCTGCGATAAAAGCGATGATGTAACAAGAAGCTGCTGTTAATAACGTAGG 100530 Query 68279 AATCATCAACACACCGAACCAACCAACATAGATGCGATTGTCA 68321 ||||| || ||| |||||||||| || | ||||| ||| Sbjct 100531 GATCATTAAACAACCAAACCAACCAATGTATAAACGATTTTCA 100573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566942012433120