Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021298.1 Length=51252 Score E Sequences producing significant alignments: (Bits) Value seq6 163 9e-36 seq273 154 5e-33 seq244 131 6e-26 seq3 107 6e-19 seq5 96.9 1e-15 seq4 91.5 5e-14 seq2 89.7 2e-13 >seq6 Length=3173221 Score = 163 bits (180), Expect = 9e-36 Identities = 224/311 (72%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40489 |||||||| ||| || |||||||||| ||| | ||||| ||||||| | | || Sbjct 3148568 GATCTGCGACACCGCCTCACGCCCGTACTTCTGGGCGGTGTACTCGATCACCCTGTCCCG 3148627 Query 40490 ACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40547 ||| ||| |||||||| ||| | |||||||| || || || || ||||||||| Sbjct 3148628 --GCCTTCCATGCAGAAGTCGACGTCAAAGTCGGGCATTGAGACCCGTTCCGGGTTCAGG 3148685 Query 40548 AACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40607 || |||||||| | | ||| |||||||| || |||||||||||| | | ||| Sbjct 3148686 AAGCGCTCGAACAGCAAATCGTATTCCAGCGGATCCAGGTCGGTGATCAGCTGCGCATAG 3148745 Query 40608 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTC 40667 || ||||| || ||||| | || || || || || || ||| || ||||| | ||| Sbjct 3148746 GCTACCAGAGAGCCGGCACCGGAACCCCGGCCCGGCCCCACCGGCACACCGTTGTTCTTG 3148805 Query 40668 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTGGATGATC 40727 ||||| ||| |||||| |||| |||||||| |||||| |||||||||||||| Sbjct 3148806 GCCCACTTGATAAAGTCCATCACGATCAGGAAGTAGCCCGGGAAACCCATCTGGATGATG 3148865 Query 40728 ATGTCGATCTC 40738 ||||| | ||| Sbjct 3148866 ATGTCCAGCTC 3148876 Score = 107 bits (118), Expect = 6e-19 Identities = 224/329 (68%), Gaps = 6/329 (2%) Strand=Plus/Plus Query 39351 GCCGCCATGTACTCGGCTGGGTAGTGCGTCTTCAGCCACGCCGTGCGGTACGCGATGAGT 39410 || |||||| |||| || ||||| || | |||||||| || |||| | | || Sbjct 3147504 GCGGCCATGAACTCTGCCGGGTAATGGGCTTTCAGCCAGAGGGTCTGGTATGACACCAGG 3147563 Query 39411 CCGTACGCCGCCGAGTGCGCCTTGTTGAAGGCGTAGCCAGCGAACGGGACCAGCACGTCC 39470 |||| || |||||||| | ||||||||| ||||||| || ||| ||| || ||| Sbjct 3147564 GCGTAGGCAGCCGAGTGGGATTTGTTGAAGCCGTAGCCGGCAAACTTTTCCACCAGGTCA 3147623 Query 39471 CACACTGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCG--CGCGCTCCCTTCT-GGAAG 39527 | | || | | || ||| || | || | | ||| || || ||||| Sbjct 3147624 AAGATATTCTCG--GCCAGGGTCTT-GTTGATTCCGTTTTTCTCGCAGCCATCCAGGAAG 3147680 Query 39528 TTCACGAACTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGG 39587 || || |||||||| |||||||||| ||||| ||||| || ||||| |||| Sbjct 3147681 ATCTGCTTCTGCTTGGCCATCTCCTCGGGCTTTTTCTTACCCATAGCGCGGCGGAGCATA 3147740 Query 39588 TCGGCCTGACCGAGGGTGTACCCGGCCATGACCTGCGCAACCTTCTGCACCTGCTCCTGG 39647 || || ||| |||||||| |||||||| ||||| || | || | |||||||||||| Sbjct 3147741 TCCGCACCACCCAGGGTGTAGCCGGCCATTACCTGGGCGATCTGCATGACCTGCTCCTGG 3147800 Query 39648 TAGATGATGAGCTGGAAGGTCGGGTCCAG 39676 || | ||||| | | |||| || ||||| Sbjct 3147801 TACAGGATGACCCCGTAGGTTGGCTCCAG 3147829 >seq273 Length=166498 Score = 154 bits (170), Expect = 5e-33 Identities = 219/303 (72%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40489 ||||||| | ||||||||| ||||| ||| ||||| |||||||||| | || Sbjct 154775 GATCTGCCCCACCTTGTCGCGGCCGTATTTCTCTTGAACGTAGCGGATCACCTCTTCCCG 154834 Query 40490 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40547 || || || |||||||||||||| |||||||| || || || |||||||||||| Sbjct 154835 GCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATCGAAACCCGTTCGGGGTTCAGG 154892 Query 40548 AACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40607 ||||| ||||| | || | |||||| || |||||||||||| || | || Sbjct 154893 AACCGTTCGAACAGAAGCGAATAGCGCAGCGGATCAAGGTCGGTGATCGTCAGCGCATAA 154952 Query 40608 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTC 40667 ||||| || || || || |||| || ||||| || |||||| | | ||| ||||| Sbjct 154953 GCGACGAGTGAGCCCGCACCAGACCCCCGCCCCGGACCGACCGGAATGTCGTGATCCTTG 155012 Query 40668 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGG-AAGCCCAT---CTGGAT 40723 ||||| |||| || ||||| |||| |||||||| | |||| |||||||| || ||| Sbjct 155013 GCCCATTGGATAAAATCCGCAACGATCAGGAAGTA-GCCGGGAAAGCCCATGCCCTCGAT 155071 Query 40724 GAT 40726 ||| Sbjct 155072 GAT 155074 >seq244 Length=185980 Score = 131 bits (144), Expect = 6e-26 Identities = 204/290 (70%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 40430 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATCACCTCGCCACG 40489 ||||||| | ||||| ||| ||||||||| | ||||| | |||||| || | || Sbjct 106462 GATCTGCCCCACCTTATCGCGGCCGTACTTCTGCTGCACGTATTTGATCACTTCCTCGCG 106521 Query 40490 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40547 || || || |||||||||||||| ||||||||||| || || || ||||||| | Sbjct 106522 GCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAAG 106579 Query 40548 AACCGCTCGAAGATGAGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40607 || || || || | || | || |||||| || |||||||| || || | || Sbjct 106580 AAGCGTTCAAACAGCAGGCTGTAGCGCAGCGGATCAAGGTCGGTAATGGTCAGCGCATAC 106639 Query 40608 GCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTC 40667 || ||||||||||| || ||||||| ||||| || || ||| || || | ||||| Sbjct 106640 GCCACCAGCGAACCCGCACCAGAGCCCCGCCCCGGCCCCACCGGGATACCCTGTTCCTTG 106699 Query 40668 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAAGCCCAT 40717 |||| ||| ||||| || |||| ||||| || ||||| ||||| Sbjct 106700 CCCCATTTGATAAAGTCTGCAACGATCAGGAAATAGCCAGGGAATCCCAT 106749 >seq3 Length=4400433 Score = 107 bits (118), Expect = 6e-19 Identities = 198/288 (69%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 40466 GACGTACTGGATCACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCAT 40525 ||| || ||||||| ||||| || ||| | | ||||||||| |||| |||||||| Sbjct 3849258 GACATAGCGGATCACTTCGCCGCGCCGCTCCTGACAGAAGTCGATATCGAAGTCGGGCAT 3849317 Query 40526 GGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAG-TCCGTGCTCCAGCGGGTCGA 40584 || || || || ||||||| ||| |||||||| | || || || ||||| || | Sbjct 3849318 CGAGACCCGTTCCGGGTTCAAGAAGCGCTCGAACAGCAGGTCAAAGCGG-AGCGGATCAA 3849376 Query 40585 GGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCTCGCCCAGGGC 40644 |||| || || || || ||||||||| || || || ||||||| || || |||| Sbjct 3849377 GGTCAGTAATGGTCAGCACCCAGGCGACCAAGGAGCCCGCACCAGAGCCCCGGCCCGGGC 3849436 Query 40645 CGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACG 40704 | ||| | | | | || || ||||| ||| ||||| || |||| | ||| || Sbjct 3849437 CAACCGGAATGTCTTGTTCTTTGGCCCATTTGATAAAGTCGGCAACGATCAAGAAATAGC 3849496 Query 40705 ACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40752 ||||||||||| | ||| ||| | | ||| || | |||| ||| Sbjct 3849497 CTGGGAAGCCCATGCGCTCGATAATGCCAAGCTCATAGTCGAGCCGCT 3849544 >seq5 Length=3486096 Score = 96.9 bits (106), Expect = 1e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40503 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATG 40562 || |||||||||| ||||||||||| || || || || || ||||| ||||| || | Sbjct 1711221 AAATCGATGTCGAAGTCGGGCATGGAAACACGTTCAGGATTGAGGAAGCGCTCAAACAGC 1711280 Query 40563 AGTCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40622 || ||| || | ||||| || || || ||| || | ||||| ||||| || ||| Sbjct 1711281 AGGTCGTATTCAATGGGGTCAAGATCAGTAATCTTTAGCGCATAGGCCACCAGAGATCCG 1711340 Query 40623 GCCGCAGAGCCTCGCCCAGGGCCGACCCAGACGCCGTTCTCCTTCGCCCAGCGGATGAAG 40682 || | || |||| || ||||| || | | | ||| || |||||||| || || Sbjct 1711341 GCACCCGAACCTCTGCCCGGGCCCACAGGAATATCCTGCTCTTTGGCCCAGCGAATAAAA 1711400 Query 40683 TCCGCGACGACGAGGAAGTACGACGGGAAGCCCATCTG 40720 ||| |||| ||||||||| ||| || ||||| || Sbjct 1711401 TCCATCACGATGAGGAAGTAACCCGGAAAACCCATTTG 1711438 >seq4 Length=3599618 Score = 91.5 bits (100), Expect = 5e-14 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 39560 CTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGAC 39619 |||||| |||||||| ||||| || |||||||| |||||| ||||| ||||| | ||| Sbjct 1855628 CTTCTTACCCATCGCGCGGCGTAGAAGGTCGGCACCACCGAGCGTGTATCCGGCGAGGAC 1855687 Query 39620 CTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 || || | ||||||||||| ||||| ||||| |||| Sbjct 1855688 CTTTGCGGCGTTCTGCACCTGTTCCTGATAGATCATGA 1855725 >seq2 Length=6328565 Score = 89.7 bits (98), Expect = 2e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 39559 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCGAGGGTGTACCCGGCCATGA 39618 ||||||| ||||| || ||||| || ||||| |||| |||||| | ||| |||| || | Sbjct 3285669 TCTTCTTACCCATAGCGCGGCGCAGAAGGTCAGCCTCACCGAGTGAGTAGCCGGACAGCA 3285728 Query 39619 CCTGCGCAACCTTCTGCACCTGCTCCTGGTAGATGATGA 39657 |||| || | || | ||||||||||||||||| ||||| Sbjct 3285729 CCTGAGCGATCTGCATCACCTGCTCCTGGTAGACGATGA 3285767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163883375431376