Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021299.1 Length=80955 Score E Sequences producing significant alignments: (Bits) Value seq244 482 1e-131 seq2 338 3e-88 >seq244 Length=185980 Score = 482 bits (534), Expect = 1e-131 Identities = 676/944 (72%), Gaps = 11/944 (1%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 || |||||||||||||| | |||||||| ||||| ||| |||||||||| |||| Sbjct 84955 GCAATCAACTGGAACCGGCTGCAGGACGACAAAGATCTGGAGATCTGGAACCGTCTGACG 85014 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCAC- 59384 ||||||||| |||| ||||| | || | ||||| || || | | || || ||| Sbjct 85015 GTAAACTTCTGGTTGCCGGAGAAAGTGCCGCTGTCCAATGATAT-TCAGTCTTGGTCACA 85073 Query 59385 GCTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGA 59444 |||||| ||| || || ||| || || ||||| ||||||||||||||| | ||||| Sbjct 85074 GCTGACCCCGGACGAACAGACCCTGACCATTCGGGTGTTCACCGGCCTGACGCTACTCGA 85133 Query 59445 CACGATCCAGGGCACCGTGGGTGCTGTGAGCCTGATCCCTGACGCGATCACGCCGCACGA 59504 |||||||||| |||||||||| || ||||| | || |||||||| ||||| || Sbjct 85134 CACGATCCAGAATGCCGTGGGTGCGCCGACGCTGATGCAGGATGCGATCACCCCGCATGA 85193 Query 59505 GGAGGCGGTGTACACGAACATCGCGTTCATGGAGTCGGTGCACGCGAAGAGCTACAGCAA 59564 ||||||||| | || ||||| || |||||| ||||||| ||| | ||| | Sbjct 85194 AGAGGCGGTGCTTAGCAATATCGCCTTTATGGAGGCGGTGCATGCGCGGTCCTATTCCTC 85253 Query 59565 CATCTTCTCGACGCTGTGCTCGTCCAAGGAGATCGACGCGGCGTTCCGCTGGTCGGAGGA 59624 | |||||||| ||||| ||| ||| | || | || ||||||||||||| ||| Sbjct 85254 GGTGTTCTCGACCCTGTGTCAAACCACTGAGGTGGATGAAGCCTTCCGCTGGTCGGCGGA 85313 Query 59625 GAATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTGACGATCC 59684 |||| | | ||||| ||| | | | | |||| ||| | ||| | | || | Sbjct 85314 GAATGAGCATCTGCAGGCCAAATCCCGGCTGATCCTTGACGAATACGATGCCACCGCCTC 85373 Query 59685 GCTGAAGCG---GAAGGTGGCCTCGACGTTGCTGGAGGGGTTCCTGTTCTACTCGGGCTT 59741 || | ||| |||| | ||| ||| || ||| | ||| ||||||| |||||||| Sbjct 85374 GCCGCTGCGCAAGAAGATCGCCAGCGTGTTCCTTGAGAGCTTCTTGTTCTATTCGGGCTT 85433 Query 59742 CTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGACATGATCCG 59801 || ||||| ||| ||||||| || || | | ||||| ||||| |||||| ||||||| Sbjct 85434 TTATCTGCCAATGCACTGGTCAAGCCGCGCGCGCCTGACCAACACTGCCGACCTGATCCG 85493 Query 59802 GCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTCCAGCGCGG 59861 || ||||| || || || || | |||||||| |||||||| || |||||||||||||| Sbjct 85494 CCTGATCATCCGCGATGAAGCCATCCACGGCTATTACATCGGCTATAAGTTCCAGCGCGG 85553 Query 59862 CCTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTACGGTCTGCT 59921 | ||||| | ||||||||| ||| |||| |||||||| | | | ||| |||| Sbjct 85554 CATGGAGCGTTTGAACGAGGCGGAACGCAAGGAACTGAAGGATTTTGCCTTTGGTTTGCT 85613 Query 59922 ACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGCGTGGGACT 59981 | || | || |||| ||| || || || | || || || || |||| || Sbjct 85614 GTTTGACCTTTATGACATTGAGGCGCGCTATACAGAGCAGCTCTATGATGGGTTGGGGCT 85673 Query 59982 GACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATGAATCTCGG 60041 ||||||||||| |||| ||||||| |||||||||||||||||| ||| ||| ||||| Sbjct 85674 CACTGAGGATGTGAAGAACTTCCTGCACTACAACGCCAACAAGGCCCTGCAGAACCTCGG 85733 Query 60042 CTACGAGGCGCTGTTCCCGCGCGACGAAAC---CGAGGTGAATGCGGCGATCTTGGCGGC 60098 | ||||||||||| ||| || || || | ||||| |||||||| ||||||| Sbjct 85734 ATTTGAGGCGCTGTTTCCG---GAAGAGACCTGCCGTGTGAACCCGGCGATCATGGCGGC 85790 Query 60099 ACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACGTATGT 60158 ||||| || || ||| || ||||||||||||||||| || || ||| | ||||| Sbjct 85791 GCTGTCGCCCGGATCGGATGAAAACCACGACTTCTTCTCCGGTTCCGGCTCAAGCTATGT 85850 Query 60159 GATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCT 60202 ||| |||||||| || | || |||||||| || ||||| |||| Sbjct 85851 GATCGGCAAGGCAGAAGCCACAGAAGACGAAGACTGGGATTTCT 85894 >seq2 Length=6328565 Score = 338 bits (374), Expect = 3e-88 Identities = 652/954 (68%), Gaps = 21/954 (2%) Strand=Plus/Plus Query 59266 GCCATCAACTGGAACCGCGTCTTTGACGACAAGGATCTTGAGGTCTGGAACCGGTTGACC 59325 ||| ||||||||||||| | |||||||||||||| || |||||||||| |||| Sbjct 3371524 GCCGTCAACTGGAACCGACTTCAGGACGACAAGGATCTGGAAATCTGGAACCGCCTGACT 3371583 Query 59326 AACAACTTCTGGCTGCCAGAGAAGATCCCTGTCTCCAACGACATCCCGGCCTGGGGCACG 59385 ||| |||||||| || || || | || | || || ||||| | |||| ||| Sbjct 3371584 GTCAATTTCTGGCTCCCGGAAAAAGTTCCCCTGTCGAATGACATTCAAAGTTGGGCGACG 3371643 Query 59386 CTGACGGAGGAAGAGCAAGTCCTCACGATGCGGGTCTTCACCGGCCTGACGATGCTCGAC 59445 ||| | ||| |||| || || || || ||||| ||||| |||| | || ||| Sbjct 3371644 CTGCACGCGGATGAGCGGCAACTGACAATCCGCGTCTTTACCGGATTGACACTTCTGGAC 3371703 Query 59446 ACGATCCAGGGCACCGTGGGTGCTGTGAGCCT-GATCCCTGACGCGATCACGCCGCACGA 59504 || || || || || |||||| ||| | ||| | |||||| | |||||||| || Sbjct 3371704 ACCATTCAAAATACGGTCGGTGCTCC-AGCGTTGATGACAGACGCGCTGACGCCGCATGA 3371762 Query 59505 GGAGGCGGTGTACACGAACATCGCGTTCATGGA----GTCGGTGCACGCGAAGAGCTACA 59560 ||||| || || ||||| ||||||||||| ||| ||||||| ||||| Sbjct 3371763 AGAGGCAGTTCTAACCAACATAGCGTTCATGGAAGCTGTCCATGCACGC----AGCTATT 3371818 Query 59561 GCAACATCTTCTCGACGCTGTGCT---CGTCCAAGGAGATCGACGCGGCGTTCCGCTGGT 59617 | |||||||||| || ||| ||||| ||| | |||| ||||||||||||| Sbjct 3371819 CTTCCGTCTTCTCGACACTCTGCCAGACGTCCGAGG---TTGACGATGCGTTCCGCTGGT 3371875 Query 59618 CGGAGGAGAATCCGAACCTGCAACGCAAGGCTCAGATCGTCCTGGACTACTACCAGGGTG 59677 ||||||||||| | || || || | ||| | | ||| || | || | | || Sbjct 3371876 CGGAGGAGAATGAGTTTCTTCAGGCAAAATCACAGCTGATTCTGAACGAATATGACGCTG 3371935 Query 59678 ACGAT---CCGCTGAAGCGGAAGGTGGCCT-CGACGTTGCTGGAGGGGTTCCTGTTCTAC 59733 | ||| ||||| |||||| ||| || | || || ||| | || ||||||||| Sbjct 3371936 CTTCTTCACCGTTGAAGAAGAAGGTCGCCAGCGTCTTT-CTTGAGAGTTTTCTGTTCTAC 3371994 Query 59734 TCGGGCTTCTACCTGCCGATGTACTGGTCTAGTCGGGGGAAGCTGACGAACACGGCCGAC 59793 ||||||||||| ||||| ||| | ||||| || || | ||||| || ||||| || || Sbjct 3371995 TCGGGCTTCTATCTGCCCATGCATTGGTCCAGCCGTGCAAAGCTCACCAACACTGCGGAT 3372054 Query 59794 ATGATCCGGCTCATCATTCGTGACGAGGCGGTGCACGGCTACTACATCGGATACAAGTTC 59853 ||||||| || |||||||| || || |||||||| |||||||| ||||| |||||||| Sbjct 3372055 CTGATCCGCCTGATCATTCGCGATGAAGCGGTGCATGGCTACTATATCGGTTACAAGTTT 3372114 Query 59854 CAGCGCGGCCTGGAGACTCAGAACGAGGCTCGCCGCGAGGAGCTGAAGGACTACACGTAC 59913 ||||| |||||||| | ||| || || || ||| | ||||| | | | Sbjct 3372115 CAGCGGATGCTGGAGACGCTTGGCGAAGCGGAGCGTGACGAGATCAAGGATTTTGCATTT 3372174 Query 59914 GGTCTGCTACTCGAGTTGTACGACAACGAGATTGAGTACACGCAGGATCTGTACGACGGC 59973 | ||| | |||| | ||||||| |||| || || | || ||||| || Sbjct 3372175 GCTCTAATGTTCGACCTTTACGACATAGAGAGCCGATATACCGAAAGCCTCTACGATCGC 3372234 Query 59974 GTGGGACTGACTGAGGATGTCAAGATGTTCCTGCGCTACAACGCCAACAAGGCGCTGATG 60033 || || || || || || || ||| ||||||| ||||||||| |||||||| ||||| Sbjct 3372235 GTAGGCCTTACCGAAGACGTGAAGCATTTCCTGCACTACAACGCGAACAAGGCATTGATG 3372294 Query 60034 AATCTCGGCTACGAGGCGCTGTTCCCGCGCGACGAAACCGAGGTGAATGCGGCGATCTTG 60093 ||||| ||||||||||| || || ||| | | | |||| || | || ||| || Sbjct 3372295 AATCTTGGCTACGAGGCCCTTTTTCCGGACAGTGTCTGCCAGGTAAACCCCGCAATCATG 3372354 Query 60094 GCGGCACTGTCCCCTGGCGGGGACGAGAACCACGACTTCTTCTCGGGCTCTGGCAGCACG 60153 || || || || || | || ||||| || ||||| || || || || ||| | Sbjct 3372355 GCCGCGCTTTCTCCCAATGCAGATGAGAATCATGACTTTTTTTCAGGATCCGGCTCGTCT 3372414 Query 60154 TATGTGATTGGCAAGGCTGAGGTTACGGAAGACGAGGATTGGGACTTCTAGTCC 60207 ||||| || |||||||| | | || ||||||| || ||||| || ||| || Sbjct 3372415 TATGTTATCGGCAAGGCGGTCGCGACCGAAGACGTAGACTGGGATTTTTAGCCC 3372468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258928890010032