Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq60 154 4e-32 seq566 95.1 4e-14 seq183 89.7 2e-12 seq10 86.0 2e-11 >seq60 Length=599436 Score = 154 bits (170), Expect = 4e-32 Identities = 341/501 (68%), Gaps = 18/501 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| | ||||| ||| ||| || | ||||||| ||| || || || || || Sbjct 57586 CTATCAAAACGACCAGGACGTAATAAAGCAGAATCTAATACATCCGCCCTATTCGTAGCA 57527 Query 288910 GCCAATACAACAATAGATTCGGTTTGC----TTAAATCCATCCATACTTGTTAAAATTTG 288965 || |||| ||||| || | ||| ||||| || ||||| ||||||||||| Sbjct 57526 GC-AATA--ACAATT-ATCCCACTTGTAGGTTTAAAACCGTCCATTTCCGTTAAAATTTG 57471 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 ||| | ||||||||| ||||||||||| | |||| | |||| | || | | || | Sbjct 57470 ATTTAATGTTTGTTCTCTTTCATCATTCGTCCCTCC---AACACCGGT-TC-CACGTTGT 57416 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 || |||| ||||||||||| || || || | | ||| || |||||| || ||| | Sbjct 57415 CTT-CCAATCGCATCAATTTCATCGATAAATAAAATACAAGGTGAATTTCGTTCAGCAGT 57357 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||||| || | ||||| || || |||| |||||| ||||||||||||||||||| Sbjct 57356 CTCAAATAAATCACGAACACGTGACGCACCAATCCCAACAAACATTTCTACAAATTCAGA 57297 Query 289146 AGCGG--ATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | ||||| ||| |||| ||| |||||| || || | |||| | || | | Sbjct 57296 CCCAGAAATACT--AATAAATGGTACTCCTGCTTCTCCAGCAATTGCCTTTGCTAATAAA 57239 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || || ||||| || || | | || || || || ||| || || || || Sbjct 57238 GTTTTTCCAGTACCAGGCGGCCCAACAATTATTACACCTTTAGGTGGATTCGCTCCTACA 57179 Query 289264 GACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 | || | | || | ||||| || |||| ||| |||| ||| | ||| || Sbjct 57178 GCTGTAAACAATTGTGGCATTTTTAAGAAAGAAACAAATTCTTCAAATTCTTGTTTAGCT 57119 Query 289324 TCATCACATCCTGCTACATCA 289344 |||||| || || |||||| Sbjct 57118 TCATCAATCCCAGCAACATCA 57098 >seq566 Length=34611 Score = 95.1 bits (104), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||| ||||||||||| || || || || || | || || || |||| | || | | Sbjct 14833 ACCCACAGCATCAATCTCATCGATAAAGATGATGCAAGGTGAGTTTTTCTTAGCCTGTTC 14774 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || | || | ||||| ||||| || | ||| || ||||||| ||||| |||||| | Sbjct 14773 GAACATGTCACGCACACGAGATGCACCCACACCCACGAACATTTCAACAAAGTCAGAACC 14714 Query 289149 GGATACT-TGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | ||| | |||||||||||| || || |||| | ||| |||||||| | Sbjct 14713 TGAGATTGTGTA-GAACGGTACATTTGCTTCACCAGCAACTGAACGCGCAAGAAGTGTTT 14655 Query 289208 TACCTGTTCCAGGTGGTCC 289226 |||| || || || ||||| Sbjct 14654 TACCAGTACCTGGAGGTCC 14636 >seq183 Length=267432 Score = 89.7 bits (98), Expect = 2e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 ||||||| ||||||||||||||||||||||||||||||||| | |||||| |||||| | Sbjct 183651 TAACTCAATTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTTGCGGGTTCAAGTCCCGCC 183592 Query 409011 TAGAACATTTTT 409022 || ||||||| Sbjct 183591 AGGAGCATTTTT 183580 >seq10 Length=1322232 Score = 86.0 bits (94), Expect = 2e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 155629 TGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGT 155688 ||||||| | ||||| ||||||||| || |||||||||||| | |||||||||| Sbjct 359713 TGTATTCAAGGATCTCTGTGCACAGGTTGGAGGACTTGATGGTGCCCAGGTTCTTCTGGT 359654 Query 155689 TAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745 | || ||||| ||||| |||||| | || ||||| || || || ||||||| || Sbjct 359653 TGCTCTTGCTGTTGCAAGCGTCCTTGAACAGCATGTACGGAGTGCCCGTCTCCACCT 359597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471803796190684