Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq6 168 2e-37 seq273 145 2e-30 seq244 134 5e-27 seq4 134 5e-27 seq3 98.7 3e-16 seq5 96.9 1e-15 seq2 80.6 9e-11 >seq6 Length=3173221 Score = 168 bits (186), Expect = 2e-37 Identities = 225/311 (72%), Gaps = 4/311 (1%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 |||||||| ||| || |||||||||| ||| | ||||| ||| ||| | | || Sbjct 3148568 GATCTGCGACACCGCCTCACGCCCGTACTTCTGGGCGGTGTACTCGATCACCCTGTCCCG 3148627 Query 40238 ACGCCGGTCATC--GAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 ||| ||| |||||||| ||| | |||||||| || || || || ||||||||| Sbjct 3148628 --GCCTTCCATGCAGAAGTCGACGTCAAAGTCGGGCATTGAGACCCGTTCCGGGTTCAGG 3148685 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 ||||||||||| | | ||| |||||||| || |||||||||||| | | ||| Sbjct 3148686 AAGCGCTCGAACAGCAAATCGTATTCCAGCGGATCCAGGTCGGTGATCAGCTGCGCATAG 3148745 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTC 40415 || ||||| || ||||| | || ||||| || || || ||| || ||||| | ||| Sbjct 3148746 GCTACCAGAGAGCCGGCACCGGAACCCCGGCCCGGCCCCACCGGCACACCGTTGTTCTTG 3148805 Query 40416 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGATGATC 40475 ||||| ||| |||||| |||| |||||||| |||||| |||||||||||||| Sbjct 3148806 GCCCACTTGATAAAGTCCATCACGATCAGGAAGTAGCCCGGGAAACCCATCTGGATGATG 3148865 Query 40476 ATGTCGATCTC 40486 ||||| | ||| Sbjct 3148866 ATGTCCAGCTC 3148876 Score = 102 bits (112), Expect = 3e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 39284 CTCCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTG 39343 || |||||||| |||||||||| ||||| ||||| || ||||| |||| || || Sbjct 3147689 CTGCTTGGCCATCTCCTCGGGCTTTTTCTTACCCATAGCGCGGCGGAGCATATCCGCACC 3147748 Query 39344 ACCCAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 |||||||||||| |||||||| ||||| || | || | |||||||||||||| | ||| Sbjct 3147749 ACCCAGGGTGTAGCCGGCCATTACCTGGGCGATCTGCATGACCTGCTCCTGGTACAGGAT 3147808 Query 39404 CAACTGGAATGTCGGGTCCAG 39424 | | | | || || ||||| Sbjct 3147809 GACCCCGTAGGTTGGCTCCAG 3147829 >seq273 Length=166498 Score = 145 bits (160), Expect = 2e-30 Identities = 217/303 (72%), Gaps = 9/303 (3%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 ||||||| | ||||||||| ||||| ||| ||||| |||| ||||| | || Sbjct 154775 GATCTGCCCCACCTTGTCGCGGCCGTATTTCTCTTGAACGTAGCGGATCACCTCTTCCCG 154834 Query 40238 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 || || || |||||||||||||| |||||||| || || || |||||||||||| Sbjct 154835 GCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATCGAAACCCGTTCGGGGTTCAGG 154892 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 || || ||||| | ||| | |||||| || |||||||||||| || | || Sbjct 154893 AACCGTTCGAACAGAAGCGAATAGCGCAGCGGATCAAGGTCGGTGATCGTCAGCGCATAA 154952 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTC 40415 ||||| || || || || |||| |||||||| || |||||| | ||| ||||| Sbjct 154953 GCGACGAGTGAGCCCGCACCAGACCCCCGCCCCGGACCGACCGGAATGTCGTGATCCTTG 155012 Query 40416 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGG-AACCCCAT---CTGGAT 40471 ||||| |||| || ||||| |||| |||||||| | |||| || ||||| || ||| Sbjct 155013 GCCCATTGGATAAAATCCGCAACGATCAGGAAGTA-GCCGGGAAAGCCCATGCCCTCGAT 155071 Query 40472 GAT 40474 ||| Sbjct 155072 GAT 155074 >seq244 Length=185980 Score = 134 bits (148), Expect = 5e-27 Identities = 205/290 (71%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 40178 GATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACG 40237 ||||||| | ||||| ||| ||||||||| | ||||| | ||| || || | || Sbjct 106462 GATCTGCCCCACCTTATCGCGGCCGTACTTCTGCTGCACGTATTTGATCACTTCCTCGCG 106521 Query 40238 ACG--CCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGG 40295 || || || |||||||||||||| ||||||||||| || || || ||||||| | Sbjct 106522 GCGATCCATGCA--GAAGTCGATGTCGAAGTCGGGCATGGAAACCCGTTCCGGGTTCAAG 106579 Query 40296 AAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAG 40355 ||||| || || | || | || |||||| || |||||||| || || | || Sbjct 106580 AAGCGTTCAAACAGCAGGCTGTAGCGCAGCGGATCAAGGTCGGTAATGGTCAGCGCATAC 106639 Query 40356 GCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTC 40415 || ||||||||||| || ||||||||||||| || || ||| || || | ||||| Sbjct 106640 GCCACCAGCGAACCCGCACCAGAGCCCCGCCCCGGCCCCACCGGGATACCCTGTTCCTTG 106699 Query 40416 GCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGACGGGAACCCCAT 40465 |||| ||| ||||| || |||| ||||| || ||||| ||||| Sbjct 106700 CCCCATTTGATAAAGTCTGCAACGATCAGGAAATAGCCAGGGAATCCCAT 106749 >seq4 Length=3599618 Score = 134 bits (148), Expect = 5e-27 Identities = 191/267 (72%), Gaps = 4/267 (1%) Strand=Plus/Plus Query 40198 CCCCGTACTTCCGGGTGACGTACTGGATGACCTCGCCACGAC--GCCGGTCATCGAAGTC 40255 ||||||| ||| ||| ||||||||||||||| | || | | | | || ||| || Sbjct 1856461 CCCCGTATTTCTCACGGACATACTGGATGACCTCGGCCCGGCGGGACTGGCA--GAAATC 1856518 Query 40256 GATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCC 40315 ||| ||||| ||||| ||| || |||||||| || ||||| |||||||||| ||| || Sbjct 1856519 GATATCGACGTCGGGAGGGGATACACGCTCGGGATTGAGGAATCGCTCGAAGAGGAGGCC 1856578 Query 40316 GTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGC 40375 | || || || || | |||||| || | | |||||| | | || ||||| || || Sbjct 1856579 GAACTGCAAGGGACAGATATTGGTGATTCCCATGGCGTAGGAGGCGAGAGAACCCGCGGC 1856638 Query 40376 AGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGC 40435 |||||||| || || ||||| || ||| ||| |||||| |||| |||||||| Sbjct 1856639 GGAGCCCCGGCCGGGACCGACGGGGATATCGTGGTCCCGCGCCCACTGGATAAAGTCCGC 1856698 Query 40436 GACGACGAGGAAGTACGACGGGAACCC 40462 | || |||||||| || | ||| || Sbjct 1856699 GGTGATAAGGAAGTAGGATGCGAAGCC 1856725 Score = 87.8 bits (96), Expect = 6e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 39308 CTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGAC 39367 |||||| |||||||| ||||| || |||||||| ||| || ||||| ||||| | ||| Sbjct 1855628 CTTCTTACCCATCGCGCGGCGTAGAAGGTCGGCACCACCGAGCGTGTATCCGGCGAGGAC 1855687 Query 39368 CTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 || ||| | ||||||||||| ||||| ||||| || Sbjct 1855688 CTTTGCGGCGTTCTGCACCTGTTCCTGATAGATCAT 1855723 >seq3 Length=4400433 Score = 98.7 bits (108), Expect = 3e-16 Identities = 194/287 (68%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 40214 GACGTACTGGATGACCTCGCCACGACGCCGGTCATCGAAGTCGATGTCGACATCGGGCAT 40273 ||| || |||| || ||||| || ||| | | ||||||||| |||| |||||||| Sbjct 3849258 GACATAGCGGATCACTTCGCCGCGCCGCTCCTGACAGAAGTCGATATCGAAGTCGGGCAT 3849317 Query 40274 GGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAG 40333 || || || || ||||||| |||||||||||| | || | ||||| || || Sbjct 3849318 CGAGACCCGTTCCGGGTTCAAGAAGCGCTCGAACAGCAGGTCAAAGCGGAGCGGATCAAG 3849377 Query 40334 GTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCC 40393 ||| || || || || ||||||||| || || || |||||||||| || ||||| Sbjct 3849378 GTCAGTAATGGTCAGCACCCAGGCGACCAAGGAGCCCGCACCAGAGCCCCGGCCCGGGCC 3849437 Query 40394 GACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAGTCCGCGACGACGAGGAAGTACGA 40453 ||| | | | || || ||||| ||| ||||| || |||| | ||| || Sbjct 3849438 AACCGGAATGTCTTGTTCTTTGGCCCATTTGATAAAGTCGGCAACGATCAAGAAATAGCC 3849497 Query 40454 CGGGAACCCCATCTGGATGATCATGTCGATCTCGTACTGGAGCTGCT 40500 ||||| ||||| | ||| ||| | | ||| || | |||| ||| Sbjct 3849498 TGGGAAGCCCATGCGCTCGATAATGCCAAGCTCATAGTCGAGCCGCT 3849544 >seq5 Length=3486096 Score = 96.9 bits (106), Expect = 1e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40251 AAGTCGATGTCGACATCGGGCATGGACACGCGCTCGGGGTTCAGGAAGCGCTCGAAGATG 40310 || |||||||||| ||||||||||| || || || || || ||||||||||| || | Sbjct 1711221 AAATCGATGTCGAAGTCGGGCATGGAAACACGTTCAGGATTGAGGAAGCGCTCAAACAGC 1711280 Query 40311 AGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCCCGAGGACGTAGGCGACCAGCGAACCG 40370 || ||| || | ||||| || || || ||| || | ||||| ||||| || ||| Sbjct 1711281 AGGTCGTATTCAATGGGGTCAAGATCAGTAATCTTTAGCGCATAGGCCACCAGAGATCCG 1711340 Query 40371 GCCGCAGAGCCCCGCCCAGGGCCGACCCAGACCCCGTTCTCCTTCGCCCAGCGGATGAAG 40430 || | || || | || ||||| || | | | ||| || |||||||| || || Sbjct 1711341 GCACCCGAACCTCTGCCCGGGCCCACAGGAATATCCTGCTCTTTGGCCCAGCGAATAAAA 1711400 Query 40431 TCCGCGACGACGAGGAAGTACGACGGGAACCCCATCTG 40468 ||| |||| ||||||||| ||| || ||||| || Sbjct 1711401 TCCATCACGATGAGGAAGTAACCCGGAAAACCCATTTG 1711438 >seq2 Length=6328565 Score = 80.6 bits (88), Expect = 9e-11 Identities = 76/97 (78%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 39307 TCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACCCAGGGTGTACCCGGCCATGA 39366 ||||||| ||||| || ||||| || ||||| |||| ||| || | ||| |||| || | Sbjct 3285669 TCTTCTTACCCATAGCGCGGCGCAGAAGGTCAGCCTCACCGAGTGAGTAGCCGGACAGCA 3285728 Query 39367 CCTGTGCAACCTTCTGCACCTGCTCCTGGTAGATGAT 39403 |||| || | || | ||||||||||||||||| ||| Sbjct 3285729 CCTGAGCGATCTGCATCACCTGCTCCTGGTAGACGAT 3285765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163323380299176