Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021531.1 Length=223989 Score E Sequences producing significant alignments: (Bits) Value seq2 150 3e-31 seq562 141 1e-28 seq4 140 5e-28 seq5 131 2e-25 seq201 123 4e-23 seq19 116 5e-21 >seq2 Length=6328565 Score = 150 bits (166), Expect = 3e-31 Identities = 181/241 (75%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCG-TTTCAACTTGCA 99010 ||||| ||||| || || |||| ||| | || || |||| ||||| ||| | || || Sbjct 4241308 GACCGGACCGGCACCGGTACGCGCTCTTTGTTTGGGTACCAAATGCGCTTTGATCTCGCC 4241249 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGC-GTTGCCACCTGCGCTCTATTATCCATGAAC 99069 ||||| ||||||||||| |||||||| | ||| ||||||| || || || || || | Sbjct 4241248 -GAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGC-ACCTGCGGTCGATCATTCACGAGC 4241191 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 |||| |||||||| ||||||||||||||| ||| || || || || || || | | Sbjct 4241190 TGCTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTCAAGGAAAACGGCGTCAAGA 4241131 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGC 99189 | ||||| || |||||||| | || ||||| || |||||||| ||||| | ||||||| Sbjct 4241130 TCTGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCGGTCTACGGATACCAGTGGC 4241071 Query 99190 G 99190 | Sbjct 4241070 G 4241070 >seq562 Length=35438 Score = 141 bits (156), Expect = 1e-28 Identities = 177/240 (74%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 98952 GACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTT-TCAACTTGCA 99010 ||||| |||||||| ||||| | || |||||| || ||| | | | ||||| Sbjct 12945 GACCGCACCGGTACGGGCACCTTGTCGTGTTTCGGCATGCAACAGCGCTATGATCTTGCC 13004 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || |||||||| || || || || ||||||||||| || || || || || Sbjct 13005 -GATGGCTTCCCGCTCGTCACCACGAAAAAACTGCACCTGCGCTCCATCATTCACGAGCT 13063 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 |||||||| || ||||| ||||| ||| | ||||||||||| |||||||| | || Sbjct 13064 TCTGTGGTTTTTGTCCGGCGATACCAACATCAAATACCTGAAAGACAATGGTGTTTCGAT 13123 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||| |||||||| ||||||||||||| || ||||| || ||| | |||||||| Sbjct 13124 CTGGGACGAGTGGGCGGATGAAAATGGCGACCTTGGGCCGGTCTATGGTTACCAGTGGCG 13183 >seq4 Length=3599618 Score = 140 bits (154), Expect = 5e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 98951 AGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010 |||||| || || || ||||| || || ||||||| | |||| || | | | ||| Sbjct 201492 AGACCGCACGGGCACTGGCACACTCTCCGTCTTCGGTCGCCAGGCCCGCTACGATCTGCG 201551 Query 99011 AGAAGGTTTCCCGCTGG-TAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAAC 99069 || || || || ||| |||| || ||| || || ||||| || ||||| || | Sbjct 201552 TGAGGGATTTCC-CTGCCTAACCACAAAGAAGCTTCATCTCCGCTCAATCATCCACGAGC 201610 Query 99070 TGCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCA 99129 ||||||||||||| ||||| |||||||| ||| |||||||| || || || || |||| Sbjct 201611 TGCTGTGGTTCCTCAAAGGTGACACCAACATCACCTACCTGAAGGAAAACGGCGTCACCA 201670 Query 99130 TTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGG 99178 | ||||||||||||||||| |||| || |||||||| || || ||||| Sbjct 201671 TCTGGGACGAATGGGCGGATGAAAACGGGGACCTCGGCCCCGTCTACGG 201719 >seq5 Length=3486096 Score = 131 bits (144), Expect = 2e-25 Identities = 216/308 (70%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 98893 CTATGAAACAGTATCAAGATTTAATGGCTGAAGTCTTTGCGA--AAGGTACGCCGAAGAA 98950 ||||||| |||||| |||| | ||| | | | | | ||| ||||| || || | Sbjct 3432906 CTATGAAGCAGTATTTAGATCTGATG-CAGCACATTCT-CGATGAAGGTGTGCATAAAGA 3432963 Query 98951 AGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010 |||||| ||||| ||||| ||||| | || ||| | ||||||||||| | || Sbjct 3432964 AGACCGAACCGGCACAGGGACGCTCAGCGTGTTTGGCTATCAGATGCGTTTTGATCTGGC 3433023 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACT 99070 | || || || |||| || || || ||||| || ||||||||||| ||||| || Sbjct 3433024 TCAGGGGTTTCCATTGGTCACCACTAAAAAGTGCCATCTCCGCTCTATTATTCATGAGCT 3433083 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 ||| ||||| || | ||| |||||||||| ||| |||| |||||||| || | || Sbjct 3433084 GCTTTGGTTTCTTCAGGGCAGCACCAATATCGCCTACTTGAACGATAATGGCGTCAAGAT 3433143 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||| || ||||| || | || || || || |||||||| || |||||||||| Sbjct 3433144 TTGGGATGATTGGGCAACTGAAGAAGGTGAGCTTGGCCCGGTATATGGGGAGCAGTGGCG 3433203 Query 99191 GGCATGGA 99198 | |||| Sbjct 3433204 ATCCTGGA 3433211 >seq201 Length=246981 Score = 123 bits (136), Expect = 4e-23 Identities = 177/247 (72%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 98952 GACCGTACCGGTACAGGCACGCTTTC-TATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010 ||||| ||||| || |||||| |||| ||| |||||| ||| ||| | | || Sbjct 14344 GACCGCACCGGCACCGGCACGATTTCCTAT-TTCGGCATGCAGCAGCGCTATTCCCTGGC 14286 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACT 99070 || || ||||| ||||| || |||||| |||||| || || | || ||||| Sbjct 14285 GGATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCACGAACT 14226 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAAAGATAATGGTGTAACCAT 99130 |||||||||||| || || || || ||| |||| || || || || || || | || Sbjct 14225 GCTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTTTCGAT 14166 Query 99131 TTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGGCG 99190 |||||||||||||||||| |||| ||||| || || ||||| ||||| ||| ||||| Sbjct 14165 CTGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAATGGCG 14106 Query 99191 GGCATGG 99197 || ||| Sbjct 14105 CGCCTGG 14099 >seq19 Length=1029424 Score = 116 bits (128), Expect = 5e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 98951 AGACCGTACCGGTACAGGCACGCTTTCTATCTTCGGCCACCAGATGCGTTTCAACTTGCA 99010 ||||||||||||| ||||| | || | ||||||| |||||| ||||||||| |||| Sbjct 785612 AGACCGTACCGGTGTCGGCACCCGGTCGGTGTTCGGCCGCCAGATCCGTTTCAACCTGCA 785553 Query 99011 AGAAGGTTTCCCGCTGGTAACGACCAAGCGTTGCCACCTGCGCTCTATTATCCATGAACT 99070 ||||| || || ||||| || |||||| |||||||||| ||||| ||||| | Sbjct 785552 GGAAGGCTTTCCCCTGGTGACCACCAAGAAGGTCCACCTGCGCAGCATTATTTATGAATT 785493 Query 99071 GCTGTGGTTCCTGAAAGGCGACACCAATATCCAGTACCTGAA--AGATAATGGTGTAACC 99128 ||| ||||| || ||| |||| | | | | ||| | || | ||| | || Sbjct 785492 GCTCTGGTTTCTCCGGGGCTCCACCGACAACACCTGGCTGCAGGAGCGGAAGGTCT--CC 785435 Query 99129 ATTTGGGACGAATGGGCGGACAAAAATGGCGACCTCGGTCCGGTATACGGTAAGCAGTGG 99188 || ||| |||| ||||| | ||||| |||||||| || | ||||| ||||||||| Sbjct 785434 ATCTGGAACGAGTGGGCACTGGAGAATGGTGACCTCGGGCCCATTTACGGCAAGCAGTGG 785375 Query 99189 CG 99190 || Sbjct 785374 CG 785373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716630242773280