Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021557.1 Length=37378 Score E Sequences producing significant alignments: (Bits) Value seq509 156 1e-33 >seq509 Length=47832 Score = 156 bits (172), Expect = 1e-33 Identities = 333/487 (68%), Gaps = 13/487 (3%) Strand=Plus/Plus Query 36265 TTATGCGGAAGTCTTCGTCGGTATGGGTGGCGTCTTCCTCCGCCGTGATCTCCAGCCTCG 36324 ||| ||||| || || || |||||||| || |||||||| | | || || || || Sbjct 31850 TTACGCGGAGCCATTTGTGGGGATGGGTGGAGTTTTCCTCCGGAG-GTCCTTCATCC-CG 31907 Query 36325 TAT--TGAAGTCATCAACGATATCAGCGGCGATGTGGCTAATCTGTTCCGTATTCTCCAG 36382 | |||||||||||||||| | |||||||||| || || ||||| || || || Sbjct 31908 AAGGCTGAAGTCATCAACGATTTTTCCGGCGATGTGATCAACCTTTTCCGCATCCTTCAA 31967 Query 36383 CGCCACTATCCGCAGTTTATGGAAACCCTTCG--GTTCCAGATCACGTCACGACGCGAGT 36440 |||||||| | |||||| ||| || || | |||||| ||||| || || || | Sbjct 31968 CGCCACTACCAACAGTTTCTGG--ACTGTTTGAAGTTCCAAATCACCAGTCGGCGGGAAT 32025 Query 36441 TCGAACGGCTCTCGAAAGTCGATCCTTCGACGCTAACCGACCTGGAGCGCGCCGCTCGCT 36500 |||| || || ||| ||| || | ||||| || ||| ||||||| || ||||| | Sbjct 32026 TCGAGCGTCTGATTAAAACCGACCCGACAACGCTGACGGACTTGGAGCGAGCTGCTCGAT 32085 Query 36501 TCCTCTATCTCCAGCGCACTGCCTTCGGCGGTAAGGTTGCGGGGCAAAACTTCGGCGTGA 36560 | || ||| | ||| || ||||||||||| || || |||| || | ||||| | | Sbjct 32086 TTCTGTATTTGCAGAAGACAGCCTTCGGCGGAAAAGTCACGGGTCAGAGTTTCGGGATAA 32145 Query 36561 -CGATGACC--GGCGCTCGCTTCAATCTTCT-GAAACTCGCCCCCCAACTGGAAGCGATC 36616 | ||||| || | || ||||| | ||| || || || || ||||||| || Sbjct 32146 GCCCTGACCGGGGTGGACGGTTCAA-CATCTCGACGCTTGCGCCGATGCTGGAAGACGTC 32204 Query 36617 CACGAGCGGATGGCAGGTGTTGTCATCGAGCAGTTGCCATGGCGAAAATTTGTCGAGCGC 36676 ||||||||| |||| || || || |||||| | || ||| |||| || ||| Sbjct 32205 CACGAGCGGCTGGCGGGGGTCGTTATCGAGAACCTGTCATTCAATGAATTCATCCCGCGT 32264 Query 36677 TATGATCGGCCGGGGATGCTTTTTTATCTCGATCCGCCCTATTGGGGGAATGAGAAGGAC 36736 |||||||| || || | || || || ||||||||| || | ||| ||| | ||| Sbjct 32265 TATGATCGTCCAGGAACACTGTTCTACTGCGATCCGCCGTACTTCGGGTGCGAGGATGAC 32324 Query 36737 TATGGCA 36743 || |||| Sbjct 32325 TACGGCA 32331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119486961350560