Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021560.1 Length=53102 Score E Sequences producing significant alignments: (Bits) Value seq2 158 4e-34 seq642 116 1e-21 seq413 109 2e-19 seq3 104 8e-18 >seq2 Length=6328565 Score = 158 bits (174), Expect = 4e-34 Identities = 244/346 (71%), Gaps = 2/346 (1%) Strand=Plus/Minus Query 31459 GTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGCGATC 31518 ||| ||||||||||| | | ||||||||| | |||||| |||||||| | ||| || || Sbjct 2916315 GTCAAGCATGGTCAGGTTGGAATTGAAGCCTTGCAACACAACTTCGGTGGAGTAACGGTC 2916256 Query 31519 ACCACCGT-CGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACCTTCG 31577 ||| | || | |||||| |||||||| |||| || ||| |||| || ||||| | Sbjct 2916255 CTGGCCGGACTGA-TCCTGCCATTTGCGGGTCTGCAACTGGCCTTCGAGATAGACCTTGG 2916197 Query 31578 ATCCCTTTTTCAGGTATTGCTCGCAAACCTTGACGAGACCTTCGGTGAAGACGACGACGC 31637 | || || || || ||| |||||| ||||||||| |||||| ||| || | Sbjct 2916196 AGCCTTTGCGCAAATAGCTTTCGGCCACCTTGCAAAGACCTTCGTTGAAGATGACCACAC 2916137 Query 31638 TATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTCGCGGTCGCGCCAGCTTTCGGAAG 31697 ||||| || || ||| || || ||| | ||||| |||||| ||| || | Sbjct 2916136 GGTGCCATTCCGTTTTCTCTCGCCGCTCACCGGAATTCCGGTCACGCCAGGATTCCGATG 2916077 Query 31698 TCGCAAGGCGAAGGCTGGCGATGCTACCCCCGGCTTGTGTCTTTCGGATTTCCGGATCGG 31757 |||| | || || ||||||| | ||| | || || || ||||||||||||| Sbjct 2916076 TCGCGATCCGCAGATTGGCGATCGGGCGCCCATCCTGGGTTCGCCGAATTTCCGGATCGG 2916017 Query 31758 CGCCGAGATGGCCGATAAGAATGACTTTGTTGACGCTACCGGCCAT 31803 |||| |||| ||||| | ||||||||||||||||| || ||||| Sbjct 2916016 CGCCCAGATTGCCGACCAAGATGACTTTGTTGACGCTGCCCGCCAT 2915971 >seq642 Length=18206 Score = 116 bits (128), Expect = 1e-21 Identities = 200/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 41528 CTGATCATTGATAGCTTCGCCGGAGGCGGCGGCGCCTCCACCGGAATCGAGATGGCGCTG 41587 |||||| |||| | ||||| || |||||||| || || || || || |||| || Sbjct 2560 CTGATCGTTGACTGTTTCGCTGGCGGCGGCGGGGCGTCGACAGGGATTTTTCTGGCACTC 2501 Query 41588 GGTCGCTCGCCTGACCTTGCCATCAATCATAATCCGCAGGCTCTTGCGCTGCATGGCGCC 41647 || ||| || || | || |||| || |||| |||| ||||| |||| | || Sbjct 2500 GGCCGCCATCCGGATATCGCGGTCAACCACGATCCAGAGGCGCTTGCCATGCACCGGGCG 2441 Query 41648 AATCACCCTGATACGCTGCACATCTCGGAAAACATCTACAAGGTCGATCCGTTGGA-CTA 41706 || ||||| || |||||||| |||| | ||||| |||||||||||||| |||| || Sbjct 2440 AACCACCCGGAAACGCTGCATGTCTCCAAGAACATTTACAAGGTCGATCCTATGGACCTT 2381 Query 41707 TGTC---GCCGGCCAGCATATCGGCCTTGCCTGGTTCTCTCCCGATTGCAAACATTTCAG 41763 || | |||||||| | || || ||| || ||||| ||||| ||||| Sbjct 2380 TGCCACAACCGGCCAG----TTGGGCTGTTGTGGGCATCGCCCGACTGCAAGCATTTTTC 2325 Query 41764 CAAGGCCAAGGGTGGCAAGCCGGTCGAGCGTAATATCCGAGACCTCGC 41811 ||||||||||||| | |||||| |||| ||| | || ||||| || Sbjct 2324 GAAGGCCAAGGGTGCCCGTCCGGTCAAGCGCAATGTTCGCGACCTGGC 2277 >seq413 Length=79672 Score = 109 bits (120), Expect = 2e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 31496 ACCACTTCGGTTGTGTAGCGATCACCACCGTCGGAGTGCTGCCACTTGCGGGTTTGCAGC 31555 || ||||| || ||||||||||| || | | ||||||||||||||||| ||| Sbjct 31434 ACGACTTCTGTGGTGTAGCGATCCTGCCCTGCTTGATCCTGCCACTTGCGGGTTTCGAGC 31493 Query 31556 TTGCCCTCGATGTAAACCTTCGATCCCTTTTTCAGGTATTGCTC-GCAAACCTTGACGAG 31614 | ||| || |||||||||||||| ||||| ||| || || || || || | | || | Sbjct 31494 TGGCCTTCAATGTAAACCTTCGAGCCCTTACGCAGATACTGTTCTGCGAAGTTCGCCGCG 31553 Query 31615 ACCTTCGGTGAAGACGACGACGCTATGCCACTCGGTGCGCTCCTTGCGGTCGCCGCTGTC 31674 | || | ||| | | |||| | ||||||||| ||||||||||| ||||| ||| Sbjct 31554 GGC-TCTGCGAACAGGGAGACGTTGTGCCACTCGACACGCTCCTTGCGCTCGCCAGTGTT 31612 Query 31675 GCGGTCGCGCCAGCTTTCGGAAGTCGCAAGGC 31706 |||||| |||||| ||| ||||||| || Sbjct 31613 GCGGTCCTTCCAGCTCTCGCTTGTCGCAACGC 31644 >seq3 Length=4400433 Score = 104 bits (114), Expect = 8e-18 Identities = 106/136 (78%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 31455 GACTGTCGAGCATGGTCAGCGTCGCATTGAAGCCGTTCAACACCACTTCGGTTGTGTAGC 31514 ||||||| ||||||||||||||||| |||||| |||||| ||||| |||| ||||| Sbjct 3784798 GACTGTCCAGCATGGTCAGCGTCGCGCCAAAGCCGCGCAACACAACTTCCGTTGAGTAGC 3784857 Query 31515 GATCACCACCG-TCGGAGTGCTGCCACTTGCGGGTTTGCAGCTTGCCCTCGATGTAAACC 31573 |||| ||| || || | |||||| ||||| || | ||||| |||||||| || | | Sbjct 3784858 GATCCTGGCCGTTCTGA-TCCTGCCATTTGCGAGTCTCCAGCTGACCCTCGATATAGAGC 3784916 Query 31574 TTCGATCCCTTTTTCA 31589 || || ||||| |||| Sbjct 3784917 TTAGAGCCCTTCTTCA 3784932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169803323971776