Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1 125 6e-24 seq53 109 5e-19 seq63 105 6e-18 seq36 95.1 1e-14 >seq1 Length=7344524 Score = 125 bits (138), Expect = 6e-24 Identities = 546/847 (64%), Gaps = 29/847 (3%) Strand=Plus/Minus Query 139092 GTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACT 139151 ||| || ||||| ||||| || || | |||| |||| || |||| ||| | || Sbjct 2685823 GTTACATACCGCTACTTCATCAGGTGCAGTGTACTCGATGATCTCGGTACAAAGGTTTGA 2685764 Query 139152 ACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAG 139211 | ||| ||||| | || || || ||||| || ||||| ||||| |||||||| Sbjct 2685763 GCTGCGGATGGTACCCAGGTTCTGCTGGTTGCTCTTGCGGTTGGCCGCATCCTTGTAAAG 2685704 Query 139212 CATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT---GAATTTGAACAAGTCCCT 139268 ||||||||||| || ||||| | || | || | ||| ||| |||| || Sbjct 2685703 GATATACGGTGTACCGGTTTCGATCTGGCTTTCCAAAATAGCGAACC---ACAAATCTTG 2685647 Query 139269 AGCTTGTA----TTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGT 139324 |||| || |||| || | | | | || |||||||||| | |||||| | | Sbjct 2685646 TGCTTTTACCACTTTG-CGGGC---ACGACCCTCCTGCTCGTACTTATGATAGAGTGCTT 2685591 Query 139325 CGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTG-TCAGGACACATGAGCGA 139382 |||| ||| ||| || ||||| | |||| || ||| | ||| | ||||| Sbjct 2685590 CGAACTCGC-CACTGTGTACGTCAAACAGATT-CGGTGCTTCATTCGGATCGAACAGCGA 2685533 Query 139383 CCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAG 139442 ||| ||||||| | || ||||| | |||||||| |||||||||||||| |||| | | Sbjct 2685532 CCAGTCGCCGTTTTCTTTCACGCGGCGCATGAACAAATCCGGAATCCACATAGCGTAGAA 2685473 Query 139443 CAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAA 139502 ||| || || || | |||||| ||| ||| |||| | ||||| || || Sbjct 2685472 CAAGTCACGAGCGCGCAACTCTTCCTTACCGTGGTTTTTCTTCAGTTCCAGGAAGTCGAA 2685413 Query 139503 AACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTT---GCCACC 139559 || || |||||||| || ||||| || || || | || ||||| || || ||||| Sbjct 2685412 TACATCTGCGTGCCAGGGCTCCAGGTAAATAGCGAAGGCACCTTTACGCTTACCACCACC 2685353 Query 139560 TTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGC 139619 || || |||| || ||| | |||||||| ||||||||| | | |||| | || Sbjct 2685352 CTGGTCAACGTAGCGGGCAGTGTCGTTGAATACTTTCAACATCGGTACAATACCG-TTGC 2685294 Query 139620 T-GTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATGC 139678 | || ||| || | |||| || ||| |||| || ||| | | | | Sbjct 2685293 TGGTACCGCCTGTACCTTTGATGTAGCTACCCTTAGCCCGGATGTTATGAATGCTCAAAC 2685234 Query 139679 CGATTCCGCCGCCAAATTTGGATATTAAAACGCA-ATCG--CGTAATGTCTCGTATATAC 139735 | || || || | | | ||| || |||| | || || | || ||| | |||| Sbjct 2685233 CAATACCACCAGCCGACTGGGAAAT--GCGCGCACAGCGGTCG-AGGGTTTCGAAAATAC 2685177 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCG 139795 | ||||| || ||| ||||| | || ||||| ||| | ||| || || | Sbjct 2685176 CGGGAATGCTATCTTCCGTCATCGACAAAAGGAAGCAGCTCGACAATTGTGGGCGTGGTG 2685117 Query 139796 TGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGT 139855 || | || ||| || |||||| | ||||| | ||| | | ||||||| | | Sbjct 2685116 TGGCCGCATTAAAGAGGGTAGGAGTAGCGTGGATAAACCACTTCTGAGACATCAGGTTAT 2685057 Query 139856 ACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCA 139915 |||| || | | ||| ||||||| |||||||||| || || | || ||||||| || Sbjct 2685056 ACGTCTCCAGCACACTCTCAATATCTGTTCCGTGGATGCCTACCGCAACGCGCATCAACA 2684997 Query 139916 TATGTTG 139922 |||| || Sbjct 2684996 TATGCTG 2684990 >seq53 Length=625924 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || || | Sbjct 125167 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125108 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || || || Sbjct 125107 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125048 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || ||| Sbjct 125047 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 124988 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| || || ||||||| ||| Sbjct 124987 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGGC 124940 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || || | Sbjct 125395 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125336 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || || || Sbjct 125335 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125276 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || ||| Sbjct 125275 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125216 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| || || ||||||| ||| Sbjct 125215 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGGC 125168 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || || | Sbjct 124939 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 124880 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || || || Sbjct 124879 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 124820 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || ||| Sbjct 124819 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 124760 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| || | ||||||| ||| Sbjct 124759 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGGCTGCGCGGGGGC 124712 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || |||||||| || || || | Sbjct 125623 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCG 125564 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || || || Sbjct 125563 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 125504 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || ||||||||||| | | | | || || ||| Sbjct 125503 CAGCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAAC 125444 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| || || ||||||| ||| Sbjct 125443 ATCCAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCGCGGTGGC 125396 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 24706 GCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGA 24765 |||||| || | || || || || || || || || |||||||| || || || | || Sbjct 126280 GCAGATTTTCGTGAAGACCCTTACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGA 126221 Query 24766 CACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACA 24825 ||| | || || || || |||||||| ||||| || || || || || || || || Sbjct 126220 CACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 126161 Query 24826 ACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||||||| ||||| || ||||||||||| Sbjct 126160 GCGCCTGATCTTCGCCGGCAAGCAGCTGGAGGA 126128 >seq63 Length=566113 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || ||||| || |||||| || || Sbjct 329047 ATGCAGATCTTCGTCAAGACCCTCACGGGAAAGACCATCACGCTTGACGTAGAACCCTCC 328988 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || | |||||||| ||||| || || || || || || || Sbjct 328987 GACACGATCGACGGCGTGAAGCCGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 328928 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||||||||||| | | | || || || ||| Sbjct 328927 CAGCGCCTGATCTTCGCTGGAAAGCAGCTGGAGGACGGCCGCACCCTGAGCGACTACAAC 328868 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || ||| | ||| || | |||| || ||| Sbjct 328867 ATCCAGAAGGAGTCGACTCTCCACCTTGTGCTGAGGCTGCGTGGTGGC 328820 >seq36 Length=729648 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || | Sbjct 220839 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220898 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || ||||| Sbjct 220899 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220958 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||||||||| || ||||||||||| Sbjct 220959 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGA 220993 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || | Sbjct 221331 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221390 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || ||||| Sbjct 221391 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 221450 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||||||||| || ||||||||||| Sbjct 221451 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGA 221485 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || | Sbjct 221823 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 221882 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || ||||| Sbjct 221883 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGATCAG 221942 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | || || || ||| Sbjct 221943 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAAC 222002 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || || || ||||| || ||| | || | || ||||||| || Sbjct 222003 ATCCAGAAAGAGTCGACTCTCCACCTTGTTCTTCGCCTGCGCGGCGG 222049 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || | Sbjct 220350 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCG 220409 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || || || || |||||||| ||||| || || || || || ||||| Sbjct 220410 GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCGCCTGATCAG 220469 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA 24858 || ||| ||||||| ||||| || ||||||||||| Sbjct 220470 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGA 220504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893483436960