Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_022066.1 Length=108297 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq5 98.7 7e-16 seq458 82.4 5e-11 >seq2 Length=6328565 Score = 111 bits (122), Expect = 1e-19 Identities = 180/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 95388 CATCTGCCGGTACCGGTCATCCATCTCCACGGTGAG-CCACCGCAGCGTCTTAACCGCCT 95446 ||||| | ||| ||||| |||||||| |||| || |||| ||| | || |||| Sbjct 5869494 CATCTTCTTGTAGCGGTCTTCCATCTC-ACGGACAGTCCACTTCAGGGCAACCACGGCCT 5869552 Query 95447 CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTT 95506 || || |||||||| || ||| || || || ||||| |||| || | |||| Sbjct 5869553 TGTTCGGATCGGTGACAACAGGCGTCAGCAGATGTGGGATGCCGTCATAGATCGAAAGTT 5869612 Query 95507 CCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCA 95566 ||| ||||||||||||||||||||| | |||| | | || || | ||||| |||| Sbjct 5869613 CCAGCATCTTCGGGTCGATCATGATCATCTTGCACTGTTCCGGTGTCAGCCGGTAAAGCA 5869672 Query 95567 TGGAAACCAGCATCGAGTTGAT-GAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACC 95625 || | | ||| | |||||| ||| | ||| || ||||| ||||||| || || ||| Sbjct 5869673 GCGACAGGATCATGGTGTTGATCGAAAC-GGATTTACCCGAACCGGTGGTCCCGGCGACC 5869731 Query 95626 AGCAGGTGGGGCAT 95639 || ||||| ||||| Sbjct 5869732 AGAAGGTGCGGCAT 5869745 >seq5 Length=3486096 Score = 98.7 bits (108), Expect = 7e-16 Identities = 225/333 (68%), Gaps = 23/333 (7%) Strand=Plus/Minus Query 95020 ACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGGCAGGAATAACCCGTC 95078 || |||||||| || | ||||| ||||| | | ||| |||| || || ||| || Sbjct 1524190 ACAAAAGCGCCGTGAACCCGGACAGGCACACTGGTACCCGACGG-CAAAAACAACATATC 1524132 Query 95079 ACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAG 95138 ||| |||| ||||||||||||||||||| ||||| ||| | ||| | Sbjct 1524131 ACCATGACCCAGCAGCTGCTCGGCTCCGCCCTGATCCAGAATCGTTCTTGAATCAATTCT 1524072 Query 95139 TGATG----CTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGATAAGGCCTGTGA 95194 ||| | ||| || | | ||| | || | || | ||||| || || || | Sbjct 1524071 TGAGGACACCTGA----AATGCCATCCTTGTGGGGATATTCGCCTTGATCAGCCCGGTTA 1524016 Query 95195 CTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGCTGCGCGCGCCT 95254 ||||| ||||| ||||||||||||||||| || |||||||| ||||| |||||||| | Sbjct 1524015 TAACATCAACGGAAGGCCGCTGCGTCGCCAGCACCAGATGAATTCCGGCCGCGCGCGCTT 1523956 Query 95255 TCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCTTTCTTGTAGCCGCC---CATCAT 95309 |||| ||||| ||| | || | || ||| |||| ||| ||| | |||||| Sbjct 1523955 TCTGTGCGATACGGGCGATAAGCTG--CTCAACTTTTTT------GCCCACAATCATCAT 1523904 Query 95310 GAGGTCTGCGAGTTCGTCGACCACTACCACGAT 95342 | ||| || | |||||| | ||| || || || Sbjct 1523903 CATGTCAGCAAATTCGTCAATCACGACGACAAT 1523871 >seq458 Length=61738 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 95452 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACC 95511 || |||||||| || ||| || ||||| || || ||| ||| || ||||||| | Sbjct 11248 GGATCGGTGACGACAGGCGTCAGCAGGTGCGGAATGTCGTCGTAGATGGACAGTTCCAGC 11307 Query 95512 ATCTTCGGGTCGATCATGATGA-GCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGA 95570 |||||||| || | |||||| | || || | || || | |||||||||| || Sbjct 11308 ATCTTCGGATCTACCATGATCAAGCGGCACTCT-TCCGGCGTCAGGCGGTAGAGCAGCGA 11366 Query 95571 AACCAGCATCGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGC 95628 | | ||||| ||||||| || | ||||||||||| ||||| | || || |||||| Sbjct 11367 CAGGATCATCGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTCGTTCCGGCGACCAGC 11424 Query 95629 AGGTGGGGCATTTTGGCCAG 95648 || || ||||| || || || Sbjct 11425 AGATGCGGCATCTTCGCAAG 11444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346422509450616