Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq5 95.1 9e-15 seq458 86.0 4e-12 >seq2 Length=6328565 Score = 111 bits (122), Expect = 1e-19 Identities = 180/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 95893 CATCTGCCGGTACCGGTCATCCATCTCCACGGTGAG-CCACCGCAGCGTCTTAACCGCCT 95951 ||||| | ||| ||||| |||||||| |||| || |||| ||| | || |||| Sbjct 5869494 CATCTTCTTGTAGCGGTCTTCCATCTC-ACGGACAGTCCACTTCAGGGCAACCACGGCCT 5869552 Query 95952 CGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTT 96011 || || |||||||| || ||| || || || ||||| |||| || | |||| Sbjct 5869553 TGTTCGGATCGGTGACAACAGGCGTCAGCAGATGTGGGATGCCGTCATAGATCGAAAGTT 5869612 Query 96012 CCACCATCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCA 96071 ||| ||||||||||||||||||||| | |||| | | || || | ||||| |||| Sbjct 5869613 CCAGCATCTTCGGGTCGATCATGATCATCTTGCACTGTTCCGGTGTCAGCCGGTAAAGCA 5869672 Query 96072 TGGAAACCAGCATCGAGTTGAT-GAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACC 96130 || | | ||| | |||||| ||| | ||| || ||||| ||||||| || || ||| Sbjct 5869673 GCGACAGGATCATGGTGTTGATCGAAAC-GGATTTACCCGAACCGGTGGTCCCGGCGACC 5869731 Query 96131 AGCAGGTGGGGCAT 96144 || ||||| ||||| Sbjct 5869732 AGAAGGTGCGGCAT 5869745 Score = 87.8 bits (96), Expect = 1e-12 Identities = 132/186 (71%), Gaps = 9/186 (5%) Strand=Plus/Plus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||||| ||||| ||| |||| ||||| || || || ||||| || |||| Sbjct 5869158 CGGGAAGTTGGCCTTGATGGTGCCGGTGATAACATCGACCGAAGGGCGCTGTGTGGCCAT 5869217 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790 || || || |||||||| || || ||| ||||||| | ||| || | | || | Sbjct 5869218 GATCAGGTGGATGCCGGCAGCACGGGCCATCTGGGCCA----GACGCTG--GATCGCGCC 5869271 Query 95791 TTCTTT---CTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGAT 95847 ||| | |||| | || ||||||||||||| |||| ||||||||| | || ||||| Sbjct 5869272 TTCAATGTCCTTGCCGGCGACCATCATGAGGTCGGCCATCTCGTCGACGATGACGACGAT 5869331 Query 95848 GTAGGG 95853 ||| || Sbjct 5869332 GTAAGG 5869337 >seq5 Length=3486096 Score = 95.1 bits (104), Expect = 9e-15 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 95684 TTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATG 95743 ||||| || || || | ||||| ||||| ||||||||||||||||| || |||||||| Sbjct 1524031 TTGATCAGCCCGGTTATAACATCAACGGAAGGCCGCTGCGTCGCCAGCACCAGATGAATT 1523972 Query 95744 CCGGCTGCGCGCGCCTTCTGGGCGATGCGG 95773 ||||| |||||||| ||||| ||||| ||| Sbjct 1523971 CCGGCCGCGCGCGCTTTCTGTGCGATACGG 1523942 >seq458 Length=61738 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 95671 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95730 ||| | ||| | ||||| ||| |||| |||||||| || || ||||| ||||||| Sbjct 10848 CGGAAAGTTCGCCTTGATCGTGCCGGTGATGACATCCACCGACGGGCGCTGTGTCGCCAT 10907 Query 95731 GACGAGATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGAC 95790 || |||||||||||| || ||||| ||| |||| || | || || | | |||| Sbjct 10908 GATGAGATGAATGCCTGCGGCGCGGGCCATCTGCGCCAGACGCTGGATAGCGCCTTCGA- 10966 Query 95791 TTCTTTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATGTA 95850 || | |||| | || ||||||| || || |||| |||||| || | | |||||||| Sbjct 10967 -TC-TCCTTGCCGGCGACCATCATCAGATCCGCCATCTCGTCAACGATGATGACGATGTA 11024 Query 95851 GGGGAGTCCGAGC 95863 || | || |||| Sbjct 11025 CGGCA-TCGGAGC 11036 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 95957 GGCTCGGTGACCACCGGCTGCAAAAGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACC 96016 || |||||||| || ||| || ||||| || || ||| ||| || ||||||| | Sbjct 11248 GGATCGGTGACGACAGGCGTCAGCAGGTGCGGAATGTCGTCGTAGATGGACAGTTCCAGC 11307 Query 96017 ATCTTCGGGTCGATCATGATGA-GCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGA 96075 |||||||| || | |||||| | || || | || || | |||||||||| || Sbjct 11308 ATCTTCGGATCTACCATGATCAAGCGGCACTCT-TCCGGCGTCAGGCGGTAGAGCAGCGA 11366 Query 96076 AACCAGCATCGAGTTGATG--AAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGC 96133 | | ||||| ||||||| || | ||||||||||| ||||| | || || |||||| Sbjct 11367 CAGGATCATCGTGTTGATGGCAACC--GACTTGCCCGAGCCGGTCGTTCCGGCGACCAGC 11424 Query 96134 AGGTGGGGCATTTTGGCCAG 96153 || || ||||| || || || Sbjct 11425 AGATGCGGCATCTTCGCAAG 11444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351744061975292