Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq6 206 4e-48 seq5 196 8e-45 seq2 91.5 2e-13 seq604 84.2 4e-11 seq4 84.2 4e-11 >seq6 Length=3173221 Score = 206 bits (228), Expect = 4e-48 Identities = 324/459 (71%), Gaps = 16/459 (3%) Strand=Plus/Plus Query 35453 GGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTC 35512 |||||| || |||||||| | || || ||||| || || ||||| | |||| || Sbjct 3121164 GGTCACGCCGGTCTGGCCAAGATACTTGCCGCCCCGGTCTTTGTAGCTGGTTTCACAAAT 3121223 Query 35513 CTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGG 35572 |||||| || || || |||||||| || || |||||||| ||||| | |||||| Sbjct 3121224 CTCGTCGGATTCAAAGAAGAGCATCTGGGCGACGCCTTCGTTGGCGTAGATCTTCGCCGG 3121283 Query 35573 CAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGG 35632 |||||||| |||||| ||| ||||| || || || |||||||| || || ||||| || Sbjct 3121284 GAGGTTGGTGGTGTTGGAGAATTCCAGGGTTACCTGGCCTTCCCATTCCGGCTCCAGGGG 3121343 Query 35633 CGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAG 35692 || ||||| |||||||| || || || || |||||| ||| |||| || | | Sbjct 3121344 AGTGACGTTAACGATGATGCCGCAACGAGCATAGGTGGACTTGCCCAGGCAGATTGTCAA 3121403 Query 35693 GACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGG 35752 || | |||||||||||||||||||| |||||||| ||||| |||||| ||||||||| Sbjct 3121404 AACACTTCGCGGAATGCGGAAGTATTCAACCGTGCGGGCCAGTGCGAAGGAGTTCGGCGG 3121463 Query 35753 AATCAGGATGCTGTCAGCCTTAACCG-----GCTGCAGGCAC--TTGGGATCGAAGTTCT 35805 ||| |||| ||| | | ||| | || | || || |||||||||| Sbjct 3121464 AAT---GATG----CAGACGTCGCCGGTGTAGTTGACGAAACTGTTCTCGTCGAAGTTCT 3121516 Query 35806 TCGGATCAACCACTGCGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCA-CGC 35864 |||| || || || || || ||||||||||| || | || | || ||| || Sbjct 3121517 TCGGGTCCACGGTGGCTGAGTGGACGTTGGTGAAGATTTTGAATTCGT-TGCTGCAGCGT 3121575 Query 35865 ACGTCATAACCATACGACGAGTTGCCGTACGAGATAACG 35903 ||||| || || || ||| ||||||| ||||| ||| Sbjct 3121576 ACGTCGTAGCCGTAGCTGGAGGTGCCGTAGGAGATCACG 3121614 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 122600 TCGTTCGGGTCGTTAGCTCAGTTGGTAGAGCATGGCGCTTTTAACGCCGTGGTCGTTGGT 122659 ||||| |||||||||||||||||||||||||| ||||||||| |||||| ||| Sbjct 2388321 TCGTTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTGGTCGAAGGT 2388380 Query 122660 TCGAGTCCAACACGACCCACCA 122681 |||| ||| |||||||||||| Sbjct 2388381 TCGAATCCTTCACGACCCACCA 2388402 >seq5 Length=3486096 Score = 196 bits (216), Expect = 8e-45 Identities = 230/311 (74%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 35445 TTCGGACGGGTCACACCCGTCTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATT 35504 || ||| | ||||| |||||||| ||||| ||||| ||||| | ||| ||| ||| | Sbjct 1113799 TTGGGAAGCGTCACTCCCGTCTGCCCCTGATATTTTCCGCCTCTATCTGCGTAGGAGGTC 1113740 Query 35505 TCGCAGTCCTCGTCACTCTCGAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACA 35564 || ||| || || ||| ||||| ||||| || || || || || ||||| || | Sbjct 1113739 TCACAGATTTCATCCGACTCAAAAAATAGCATTTGAGCAACGCCCTCATTCGCATAAATC 1113680 Query 35565 CGCGCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGT 35624 ||| || | | || || ||| |||||||| ||||| || ||||||||||| ||| Sbjct 1113679 TTCGCTGGTAACGTCGTCGTATTGGAAAACTCCAGCGTCACGTGCCCTTCCCACTCGGGT 1113620 Query 35625 TCCAGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACAC 35684 || ||||| || ||||| ||||| || |||||||| ||||||||| ||||||||||| Sbjct 1113619 TCGAGCGGTGTGACGTTCACGATAATCCCACAGCGGGCGTAGGTGGATTTACCCAAACAA 1113560 Query 35685 ACCACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTG 35744 ||| | || ||||| || ||||||||||| |||||||| |||||||| ||| | Sbjct 1113559 ACCGTCAACACCGAACGCGGGATACGGAAGTATTCCACCGTGCGAGCCAGAGCAAAGGAG 1113500 Query 35745 TTCGGCGGAAT 35755 || ||||| || Sbjct 1113499 TTTGGCGGGAT 1113489 >seq2 Length=6328565 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 |||||||||||||||||||||||||| ||| |||||||| |||| ||||||||| Sbjct 3525894 GCCGGTATAGCTCAGCTGGTAGAGCACGTGATTTGTAATCTCGGGGTCGCGGGTTCGAAT 3525953 Query 120288 CCTGATGCCGGCACCATATT 120307 |||| |||||||||||| || Sbjct 3525954 CCTGCTGCCGGCACCATTTT 3525973 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 120234 ATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 3114639 ATAGCTCAGCTGGTAGAGCAACTGACTTTTAATCAGTAGGTCCAGGGTTCGAACCC 3114694 >seq604 Length=28631 Score = 84.2 bits (92), Expect = 4e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 120234 ATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCC 120289 |||||||||||||||||||||||||||| ||||||||||||| |||||||| ||| Sbjct 12256 ATAGCTCAGCTGGTAGAGCAACTGACTTTTAATCAGTAGGTCCAGGGTTCGAACCC 12311 >seq4 Length=3599618 Score = 84.2 bits (92), Expect = 4e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCG-AT 120286 ||||| |||||||| ||||||||||||||| |||||||||||||||| |||||| || Sbjct 1454028 GCCGGCTTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGACGGTTCGAAT 1454087 Query 120287 CCCTGATGCCGGCACCATATTCTCT 120311 || | | |||||| |||| |||||| Sbjct 1454088 CCGTCA-GCCGGCTCCAT-TTCTCT 1454110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 825909242861280