Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq63 141 6e-29 seq53 141 6e-29 seq36 132 3e-26 >seq63 Length=566113 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || |||||| || ||||| | || ||||||||| ||||| ||||| Sbjct 328821 CCACCACGCAGCCTCAGCACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 328880 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| |||||||| ||||||||||| || |||||||| | || Sbjct 328881 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 328940 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || | || ||| | |||| || || || || Sbjct 328941 ATGCCCTCCTTGTCCTGGATCTTCGGCTTCACGCCGTCGATCGTGTCGGAGGGTTCTACG 329000 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| || ||||||||||||||||||||||| || |||||||||||| Sbjct 329001 TCAAGCGTGATGGTCTTTCCCGTGAGGGTCTTGACGAAGATCTGCATG 329048 Score = 123 bits (136), Expect = 2e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 |||| || || || ||||| ||| |||| | || ||||| |||||||||||||||| Sbjct 329441 CCTTTTGGATATTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGA 329500 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || || || ||| Sbjct 329501 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTATGCTTCACGCCGT 329560 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||| || |||| ||| | |||||| |||||||| ||||| |||| Sbjct 329561 CGATCGTGTCCGAGGGCTCCACGTCAAGGGTGACGGTCTTGCCCGTGAGAGTCTTGACAA 329620 Query 34968 AGATCTGC 34975 |||||||| Sbjct 329621 AGATCTGC 329628 >seq53 Length=625924 Score = 141 bits (156), Expect = 6e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || | || |||||| || ||||| | || ||||||||| ||||| ||||| Sbjct 124713 CCCCCGCGCAGCCTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 124772 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| | || ||||| ||||| |||||||||||||| || |||||||| | || Sbjct 124773 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGG 124832 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || || ||| | |||| || || ||| || Sbjct 124833 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACG 124892 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | || |||||||| |||||||||||||| || |||||||||||| Sbjct 124893 TCGAGCGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 124940 Score = 138 bits (152), Expect = 7e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || ||||| | || ||||||||| ||||| ||||| ||| |||| | Sbjct 124953 CTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCG 125012 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||| Sbjct 125013 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 125072 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || ||| | |||| || || ||| || || | || ||| Sbjct 125073 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATG 125132 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| |||||||||||||| || |||||||||||| Sbjct 125133 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125168 Score = 138 bits (152), Expect = 7e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || ||||| | || ||||||||| ||||| ||||| ||| |||| | Sbjct 125181 CTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCG 125240 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||| Sbjct 125241 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 125300 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || ||| | |||| || || ||| || || | || ||| Sbjct 125301 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATG 125360 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| |||||||||||||| || |||||||||||| Sbjct 125361 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 125396 Score = 132 bits (146), Expect = 3e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 ||||| || ||||| | || ||||||||| ||||| ||||| ||| |||| | Sbjct 125409 CTCAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCG 125468 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||| ||||| |||||||||||||| || |||||||| | || | ||||||||| Sbjct 125469 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTG 125528 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || || || || ||| | |||| || || ||| || || | || ||| Sbjct 125529 TCCTGGATCTTCTGCTTCACGCCGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATG 125588 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| |||||||||||||| || ||||| |||||| Sbjct 125589 GTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCATG 125624 Score = 114 bits (126), Expect = 8e-21 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| ||| |||| | || ||||| ||||| |||||||||| Sbjct 126093 CCTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 126152 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | || || || || ||| Sbjct 126153 TCAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 126212 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||| || || | || |||||||| ||||| |||||||| || | Sbjct 126213 CGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTCTTGCCCGTAAGGGTCTTCACGA 126272 Query 34968 AGATCTGC 34975 | |||||| Sbjct 126273 AAATCTGC 126280 >seq36 Length=729648 Score = 132 bits (146), Expect = 3e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| ||| |||| | || ||||| ||||| |||||||||| Sbjct 220539 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGA 220480 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || ||||| || |||| | ||||||||||| | || || || || ||| Sbjct 220479 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220420 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||| || || | ||| |||||||| |||||||||||||| || | Sbjct 220419 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220360 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 220359 AGATCTGCATG 220349 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| ||| |||| | || ||||| ||||| ||||| |||| Sbjct 221028 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220969 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || ||||| || |||| | ||||||||||| | || || || || ||| Sbjct 220968 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 220909 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||| || || | ||| |||||||| |||||||||||||| || | Sbjct 220908 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 220849 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 220848 AGATCTGCATG 220838 Score = 129 bits (142), Expect = 4e-25 Identities = 143/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| ||| |||| | || ||||| ||||| ||||| |||| Sbjct 221520 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 221461 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || ||||| || |||| | ||||||||||| | || || || || ||| Sbjct 221460 TCAGACGCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGCCGT 221401 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||| || || | ||| |||||||| |||||||||||||| || | Sbjct 221400 CGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 221341 Query 34968 AGATCTGCATG 34978 ||||||||||| Sbjct 221340 AGATCTGCATG 221330 Score = 127 bits (140), Expect = 1e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| ||||| ||||| || |||| | || ||||| ||||| |||||||| Sbjct 222014 CTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 221955 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||||| || ||||| || |||| | ||||||||||| | || || || || ||| Sbjct 221954 GATCAGACGCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGCC 221895 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | |||| || || ||| || || | ||| |||||||| |||||||||||||| || Sbjct 221894 GTCGATCGTGTCCGAGGGCTCCACGTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 221835 Query 34966 AAAGATCTGCATG 34978 |||||||||||| Sbjct 221834 GAAGATCTGCATG 221822 Score = 125 bits (138), Expect = 5e-24 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || |||| | || ||||| ||||| ||||| |||| Sbjct 220066 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGA 220007 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 |||| || |||||||| | || | ||||||||||| | |||||||| || ||| Sbjct 220006 TCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATTTTTTGCTTCACGCCGT 219947 Query 34908 CTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAA 34967 | |||| || || ||||||||| | ||| |||||||| |||||||| ||||| || | Sbjct 219946 CGATCGTGTCCGAGGGCTCGACATCTAGGGTGATGGTCTTGCCCGTGAGAGTCTTGACGA 219887 Query 34968 AGATCTG 34974 | ||||| Sbjct 219886 AAATCTG 219880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325689894413108