Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 3e-11 >seq2 Length=6328565 Score = 82.4 bits (90), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| || ||||||||||| ||| ||| |||| |||||||||| |||||||||| Sbjct 30612 TGGTTGCGGGAGCAGGATTTGAACCTGCGACCTTCAGGTTATGAGCCTGACGAGCTACCG 30553 Query 50168 AACTGCTCTACTCCGCATTA 50187 |||||| | |||| ||| Sbjct 30552 GGCTGCTCCATCCCGCGTTA 30533 Score = 82.4 bits (90), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| || ||||||||||| ||| ||| |||| |||||||||| |||||||||| Sbjct 5614492 TGGTTGCGGGAGCAGGATTTGAACCTGCGACCTTCAGGTTATGAGCCTGACGAGCTACCG 5614551 Query 50168 AACTGCTCTACTCCGCATTA 50187 |||||| | |||| ||| Sbjct 5614552 GGCTGCTCCATCCCGCGTTA 5614571 Score = 82.4 bits (90), Expect = 3e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 50108 TGGTTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCG 50167 ||||||||| || ||||||||||| ||| ||| |||| |||||||||| |||||||||| Sbjct 6278273 TGGTTGCGGGAGCAGGATTTGAACCTGCGACCTTCAGGTTATGAGCCTGACGAGCTACCG 6278214 Query 50168 AACTGCTCTACTCCGCATTA 50187 |||||| | |||| ||| Sbjct 6278213 GGCTGCTCCATCCCGCGTTA 6278194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181601621414184