Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023561.1 Length=173276 Score E Sequences producing significant alignments: (Bits) Value seq19 89.7 6e-13 seq4 87.8 2e-12 >seq19 Length=1029424 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 74609 TGGTGACCCCAGCAGGACTCGAACCTGCAACCTAGCGATTATGAGTCGCGTGCTCTAACC 74668 ||||| |||||| ||||||||||| || ||| || ||||||||||| | |||||||||| Sbjct 39229 TGGTGGGCCCAGCTGGACTCGAACCAGCGACCAAGGGATTATGAGTCCCCTGCTCTAACC 39170 Query 74669 AATTGAGCTATAGGGCC 74685 || ||||||||||| || Sbjct 39169 AACTGAGCTATAGGCCC 39153 >seq4 Length=3599618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 72104 TGGTGCCGGTTAACGGATTCGAACCGCTGACCCTCTCATTACAAATGAGCTGCTCTACCA 72163 ||| ||||| | |||||||||||||| |||| || ||||||||| || |||||||||| Sbjct 1454103 TGGAGCCGGCTGACGGATTCGAACCGTCGACCTACTGATTACAAATCAGTTGCTCTACCA 1454044 Query 72164 ACTGAGCTAAACCGGC 72179 |||||||||| ||||| Sbjct 1454043 ACTGAGCTAAGCCGGC 1454028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554350127649920