Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq5 163 8e-36 seq19 98.7 3e-16 >seq5 Length=3486096 Score = 163 bits (180), Expect = 8e-36 Identities = 219/299 (73%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 30095 ATCTCTGTTGTGTAGCGGTCCTGACCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAA 30154 |||||||| ||||| || ||||| || ||||| | ||||| || || ||||| | | | Sbjct 756545 ATCTCTGTGGTGTAACGATCCTGGCCATCCTGACCTTGCCATTTGCGCGTTCTCAACGCA 756486 Query 30155 CCCTCGACGTACAG-TTGCTGACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCA-AC- 30211 ||||| | || | ||||| ||| || || | || | ||| ||||||| |||| || Sbjct 756485 CCCTCTATATAGACCTTGCT-ACCTTTTTTCAGGTATTCGCCGGCGATCTCAGCCAGACG 756427 Query 30212 -TTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTT 30270 || ||||||||| || ||||||||||| || |||||||| ||||||||||||||||| Sbjct 756426 ATT---GAAGAACACAACACGGTGCCATTCAGTACGCTCCTGCTGCTGGCCGGTCTGCTT 756370 Query 30271 GTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACCGCATTGCCGTTGGGCAT 30330 ||| ||||| | ||| ||| || | ||| || || ||||| | ||| |||| | Sbjct 756369 GTCTTTCCATGTTTCGGAGGTAGCAATACTGAGATTAGTAACCGCGCTTCCGCTGGGTAA 756310 Query 30331 ATAGCGAGTTTCCGGGTCACCACCGACGTTGCCAACCAGAATGACTTTGTTAACGCCTC 30389 ||| ||||| ||||| | ||| || || || |||||||||||||| || |||| Sbjct 756309 ATACTTTGTTTCTGGGTCGCTGCCGCAATTACCCACTAGAATGACTTTGTTTACACCTC 756251 >seq19 Length=1029424 Score = 98.7 bits (108), Expect = 3e-16 Identities = 222/330 (67%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 30064 CATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCCTGACCGTC 30123 |||||||||||| |||| || || || | | ||| || |||||| |||||||| || Sbjct 986606 CATCTGCATCTGGCCGTTGATATCCACCACAACCTCGGTGGTGTAGACATCCTGACCTTC 986665 Query 30124 CTGCGCCTGCCACTTTCGAGTTCTG-AGTGAACCCTCGACGTACAGTTGCTGACCCTTCT 30182 || |||||| || || | |||| || ||||| | ||| | | | ||||| Sbjct 986666 CTTGTTCTGCCATTTGCGCG-TCTGCAGCTTGCCCTCAATGTAGACCTTCGAGCCCTTGC 986724 Query 30183 TTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGG 30242 | | ||| ||| | | || || | ||| ||||| | || || ||||||||||||| Sbjct 986725 GCAGATACTGGCCGGCCACTTCGGCGATCTTGCCGAACATGACAACCCGGTGCCATTCGG 986784 Query 30243 ---TGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGG 30299 | || || |||| |||||||| ||||| |||| ||| || || || Sbjct 986785 TTTTCGGCACCAATTGC---CCGGTCTGACGATCCTTGTAGCTTTCGTCTGTTGCCAGAT 986841 Query 30300 TGATGTTGGTCACCGCATTGCCGTTGGGCATATAGCGAGTTTCCGGGTCACCACCGACGT 30359 | | ||| || ||||| ||||| || | ||||| || |||||||| || | || Sbjct 986842 TCAGGTTCACAACGGCATTACCGTTAGGGGTGTAGCGGGTATCCGGGTCCTGTCCCAGGT 986901 Query 30360 TGCCAACCAGAATGACTTTGTTAACGCCTC 30389 | || | |||||| |||||||| ||||||| Sbjct 986902 TACCGATCAGAATTACTTTGTTTACGCCTC 986931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145637134038208