Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023581.1 Length=77792 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 1e-11 >seq1 Length=7344524 Score = 84.2 bits (92), Expect = 1e-11 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 37916 AAGGCAGCATTGCCACCTTGTCATACATTGTTCCAGTTCTTTGTAGAGAATGGAAAACTA 37975 ||||||| || ||||| ||||| || | ||||| || | || | |||| ||| | Sbjct 588163 AAGGCAGGGTTACCACCGTGTCACACCCTCTTCCAATTTTACGTGGCTGATGGGAAATTG 588222 Query 37976 AGCTGTCAGTTATATCAACGTAGTGCTGATTTCTTCTTAGGTGTTCCATTTAATATTGCA 38035 || || | || || ||| ||||||| | || | || || || |||||||| ||| Sbjct 588223 TCGTGCCAACTGTACCAGCGTTCTGCTGATGTATTTCTGGGGGTACCTTTTAATATAGCA 588282 Query 38036 AGCTATGCGTTGCTTACACATATCGTAGCTGCAGAATGTGGATTAGAAGTTGGTGAATTT 38095 |||||||| ||||| || ||| | ||||| | || | | | ||||| || || ||| Sbjct 588283 AGCTATGCCTTGCTCACTCATTTGATAGCTCAGGTTTGCGAACTGGAAGTGGGCGATTTT 588342 Query 38096 GTCTGGACTGGTGGTGTAGTTCACCTGTACAGTAATCACCTTGAGCAAGCTAAAAAACAA 38155 ||| ||| ||| | | ||||| || | |||||| | |||||| | | ||| Sbjct 588343 GTCCATACTTTTGGCGATGCACACCTCTATAATAATCATATGGAGCAAACGCAGCTCCAA 588402 Query 38156 TTAAGTCGTCCACC 38169 || || ||| |||| Sbjct 588403 TTGAGCCGTACACC 588416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 248807380307356