Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq19 96.9 5e-15 seq2 93.3 6e-14 seq519 84.2 3e-11 >seq19 Length=1029424 Score = 96.9 bits (106), Expect = 5e-15 Identities = 123/169 (73%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 92155 TGCCCACTCGTTCCAGATGGTAACCC----CTTCTTTGGCCAACTCTCGGTTGTCCGTGG 92210 |||||||||||||||||||| ||| || || |||| | |||||| |||| Sbjct 785417 TGCCCACTCGTTCCAGATGGAGACCTTCCGCTCCTGCAGCCAGGT----GTTGTCGGTGG 785472 Query 92211 AACCCTGCATGAACCAGAGCATCTCGTGAATGATGCTGCGCAAGTGAACTTTCTTGGTGG 92270 | ||| | | |||||||||| || | ||| |||||||||| ||| || |||||||||| Sbjct 785473 AGCCCCGGAGAAACCAGAGCAATTCATAAATAATGCTGCGCAGGTGGACCTTCTTGGTGG 785532 Query 92271 TGACTAGCGGAAACCCGTCCGCGAGGTTAAAGCGCATTTGGTGACCAAA 92319 | || || ||||| || ||| ||||| || || || ||| | || || Sbjct 785533 TCACCAGGGGAAAGCCTTCCTGCAGGTTGAAACGGATCTGGCGGCCGAA 785581 >seq2 Length=6328565 Score = 93.3 bits (102), Expect = 6e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 92221 GAACCAGAGCATCTCGTGAATGATGCTGCGCAAGTGAACTTTCTTGGTGGTGACTAGCGG 92280 ||||||||||| |||||||||||| |||| ||| | || ||||| ||||| ||||| Sbjct 4241180 GAACCAGAGCAGCTCGTGAATGATCGACCGCAGGTGCAGCTTTTTGGTCGTGACCAGCGG 4241239 Query 92281 AAACCCGTCCGCGAGGTTAAAGCGCATTTGGTGACCAAA 92319 ||||| || ||||| | |||||||||||||| ||||| Sbjct 4241240 GAACCCTTCGGCGAGATCAAAGCGCATTTGGTACCCAAA 4241278 >seq519 Length=45421 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 87487 TTCTCACCCAGACGTGTCAGGAACATTTTCATCTGTGCCTTG--GTTACGTTCTGGGCTT 87544 |||||||||| ||| |||||||||||||||||| ||| ||| ||| ||||| |||| Sbjct 32643 TTCTCACCCAAACGCGTCAGGAACATTTTCATC--TGCATTGGCGTTGTATTCTGTGCTT 32700 Query 87545 CGTCCAGGATAACTACCGCGTTCTCAAACGTGCGGCCACGCATATACGCGAAGGGAGCAA 87604 | |||| |||||| | || || || ||| || || ||||| | || || || |||| Sbjct 32701 CATCCAAAATAACTGCAGCATTGGTAAGCGTTCGTCCGCGCATGAATGCCAATGGCGCAA 32760 Query 87605 TTTC 87608 |||| Sbjct 32761 TTTC 32764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 698550408205280