Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023688.1 Length=222006 Score E Sequences producing significant alignments: (Bits) Value seq3 86.0 9e-12 seq2 86.0 9e-12 seq5 84.2 3e-11 >seq3 Length=4400433 Score = 86.0 bits (94), Expect = 9e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 93173 TGGTGCGGATGGTCGGACTCGAACCGACATGCCCGGAGGCGCTAGATCCTAAATCTAGTG 93232 |||||||||||| ||||| ||||| || ||| | ||||| ||| ||||||||| ||| Sbjct 3471748 TGGTGCGGATGGAGGGACTTGAACCCCCACGCCTCGCGGCGCCAGAACCTAAATCTGGTG 3471689 Query 93233 TGACTGCCAATTTCACCACATCCGCAT 93259 | || |||||||| |||||||||||| Sbjct 3471688 CGTCTACCAATTTCGCCACATCCGCAT 3471662 Score = 86.0 bits (94), Expect = 9e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 94135 ATAGGATTTGAACCTATGACCCTCTGATCCCAAACCAGATGCGCTACCGGACTGCGC 94191 |||||||| ||||||| ||||||||| ||||||||||||||||||||| |||||||| Sbjct 3749091 ATAGGATTCGAACCTACGACCCTCTGGTCCCAAACCAGATGCGCTACCAGACTGCGC 3749147 >seq2 Length=6328565 Score = 86.0 bits (94), Expect = 9e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 93173 TGGTGCGGATGGTCGGACTCGAACCGACATGCCCGGAGGCGCTAGATCCTAAATCTAGTG 93232 |||||||||||| ||||| ||||| || ||| | ||| | ||| ||||||||| | | Sbjct 3326145 TGGTGCGGATGGAGGGACTTGAACCCCCACGCCTTGCGGCACCAGAACCTAAATCTGGCG 3326204 Query 93233 TGACTGCCAATTTCACCACATCCGCAT 93259 || || ||||||||||||||||||||| Sbjct 3326205 TGTCTACCAATTTCACCACATCCGCAT 3326231 >seq5 Length=3486096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 94901 CCGTATGGAATTCGAATCCATGTTACCGCCGTGAAAGGGCAGTGTCCTAGTCCACTAGAC 94960 ||||| || | ||||| || |||||||||||||||||||| ||||||||| || |||||| Sbjct 1119463 CCGTAGGGGAGTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAC 1119404 Query 94961 GAACGG 94966 |||||| Sbjct 1119403 GAACGG 1119398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710284700835520