Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023693.1 Length=148612 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 seq1 86.0 6e-12 >seq5 Length=3486096 Score = 113 bits (124), Expect = 4e-20 Identities = 448/698 (64%), Gaps = 19/698 (3%) Strand=Plus/Plus Query 26011 aaaaGCAATCTCTTCCAGGCATGCAACCTTCATACCTTGTTGCTTCTCTATTGCATGAAC 26070 ||||||||| ||||| ||||| || || || | || || ||| ||| | | || || Sbjct 2541289 AAAAGCAATTTCTTCAAGGCACGCCACTTTAAAGCCCTGACGCTGCTCGACCGTTTGCAC 2541348 Query 26071 AAATTGAGATGCTTCCATAAGACTTTCATGTGTTCCTGTATCCAGCCAAGTGAAACCTCT 26130 || || || | ||||| | ||| || |||||||| | ||| | ||||||| Sbjct 2541349 GAACTGCCCAGCCTGTATAAGCGAATTATGCGTACCTGTATCTAACCAGGCAAAACCTCG 2541408 Query 26131 TCCTAGTTTACAGACACGTAAAGTCTTTTCTTTCCAGTACATC-TCATTTATATCCGTAA 26189 || || | |||| | | | || || | |||||| | | | || | |||||||| Sbjct 2541409 GCCAAGCAAGCTGACATGAAGA-TCATTGCGTTCCAGATAAGCGTTGTTCACATCCGTAA 2541467 Query 26190 TCTCTAACTCCCCTCTAGCAGAAGGTTTAA-CGCTCTTAGCTTTCTGTATAACAGAATTA 26248 | || | || || | | |||||||||| |||| || || ||| | ||| || Sbjct 2541468 TTTCCAGTTCGCCACGCGGCGAAGGTTTAACCGCT-TTGGCAATCTCCACCACATCGCTA 2541526 Query 26249 TCGTAAAAGTACAAGCCTGTGATTGCGTAGTTGCtttttggtgtttttggtttttCTTCA 26308 || ||||| ||||| || || | ||||| || |||||| |||| |||||||| ||| Sbjct 2541527 TCATAAAAATACAACCCGGTAACCGCGTAATTCGATTTTGGCGTTTCCGGTTTTTCCTCA 2541586 Query 26309 ATACTCACCACTGTACCTTCAGAATCAAACTCAACAACACCAAATCTTTCAGGATCATTT 26368 ||||| | | | || | |||||||| || || ||||||| ||||||||| | Sbjct 2541587 ATACTTATTGCCTTTCCAGAGGCGTCAAACTCCACCACGCCAAATCGCTCAGGATCAGTC 2541646 Query 26369 ACGTGATACCCAAAGATATTAGCTCCACCATTC---TTTTCAATATGTTCTTTAGCAGAA 26425 || || || ||||||| ||| ||||| || || | ||| | ||| Sbjct 2541647 ACATGGTAGCCAAAGACTGTAG---CACCAGTCGCACGCCCACCAGCTTC--GACCAGTT 2541701 Query 26426 TCTAAAATGCTACCAAAACTCTGACCAAAGAATAAATTATCACCTAGCACAAGTGCTACA 26485 | | | | ||||||||| |||||||| | ||| || |||| |||||| || Sbjct 2541702 TTTCAGA-------AAAACTCTGGCCAAAGAAAATATTGTCTCCTAACACAAGGCAGGCA 2541754 Query 26486 GAATCTTCACCAATAAAGTTCTCACCAATAATAAACGCTTCTGCTAAACCTTTTGGGCTA 26545 || | |||||| | ||| || || | || || | || ||||| | ||||| Sbjct 2541755 TTGTCATTGCCAATATGCTGCTCGCCGATCAAGAAGGCCTGAGCCAAACCATCCGGGCTT 2541814 Query 26546 TCCTGTATTGCATACTGTAGGGAAATACCAAAAGAAGAACCATCACCTAGAAGATTTACA 26605 ||| ||||| | | |||||||| ||| || || || | ||| Sbjct 2541815 GGCTGCTCGGCATAACTAATGTCTATACCAAACTGGCTACCGTCGCCCAGCAACTTTTGG 2541874 Query 26606 AAATTAATTTGATCTTCTGGTGTTGTAATTATTAGTATTTCCCTAATTCCAGAAAGCATT 26665 ||||| ||||||| ||||| | ||| | || | |||| |||||| | |||||| Sbjct 2541875 AAATTGGGCAGATCTTCGGGTGTCGAAATAACCAGCACATCCCGAATTCCGGCGAGCATT 2541934 Query 26666 AGGACAGAGAGTGGATAATAAATCATAGGTTTATCGTA 26703 || || | || ||||||||||| || |||||||| Sbjct 2541935 AGCGTCGATAACGGGTAATAAATCATCGGCTTATCGTA 2541972 Score = 111 bits (122), Expect = 1e-19 Identities = 164/225 (73%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 27208 GGTATTAGTTTTTCTGGATGATGATATGCTCCAAAATTATTTGAACAATTTGTTA-TAAC 27266 ||||| || ||||| ||| |||||| | ||| |||| || ||||| || || | |||| Sbjct 2539081 GGTATCAGCTTTTCAGGAAAATGATAGGGCCCATAATTGTTGGAACAGTTAGTGACTAAC 2539140 Query 27267 TGTCGGAATACCATAAGTACGATGCCACGCTCTTACCAAATGATCGCTTGCAG-CTTTAG 27325 ||| | ||||||||| || ||||| |||| |||| |||||| | || | ||||| Sbjct 2539141 AC-CGGCAAACCATAAGTGCGGTGCCATGCTCGCACCAGATGATC-CGAGCTGGCTTTAC 2539198 Query 27326 ATGCAGCATATGGACTACTTGGTTTATA--AGGATTCTGTTCTGTAAACGGATAATCTCC 27383 ||| | ||| ||| || || | || ||| ||| || |||||| ||| ||| Sbjct 2539199 TTGCTGAATAGGGAGAGCTCGGCTCGTACGAGGTTTCC--TCGGTAAACAGATCATCGGT 2539256 Query 27384 TTCTTCCAGATCACCATACACTTCATCTGTTGAAATATGATGGAA 27428 | ||||||||||||| || |||||||| || ||||||||||| || Sbjct 2539257 TCCTTCCAGATCACCGTAGACTTCATCAGTCGAAATATGATGAAA 2539301 Score = 82.4 bits (90), Expect = 7e-11 Identities = 224/332 (67%), Gaps = 16/332 (5%) Strand=Plus/Plus Query 25457 ATATCTGGATCATTCC-ACGCAAGACTACACTCTGAAGTCGGA----TCGTAATATTCTG 25511 ||||||||||||| || ||||||| || || |||||| ||||| || || | Sbjct 2540726 ATATCTGGATCATCCCAACGCAAG-GAACCTTC----GTCGGAGGGGTCGTAGTAATCAG 2540780 Query 25512 TACATTTGTATTCAAAATCAGCAATATCACTAATCACAACAAAGCCATGAGCGAAACCAG 25571 | || || |||||||| || || || || |||| ||| || || || | || | Sbjct 2540781 TGCACTTATATTCAAAGTCGGCCGATTCCGAAAGAACAAGAAAACCGTGGGCAAGTCCGG 2540840 Query 25572 GAGGAATCCAAAATTGTGTTTTATTCTTTTCAGATAAGAGAACACCTACCCATTCTCCAA 25631 | || | |||||| || ||| || | ||||| | | || ||| |||||| |||| Sbjct 2540841 GTGGCACCCAAAACTGGCGTTTGTTTTCCTCAGAAAGTATCACCCCTTCCCATTTGCCAA 2540900 Query 25632 ATGTTGGACTACCAAC-CCTAATATCTACAGCAACATCATAAACTTCACCACGAACAC-A 25689 ||| | ||| ||| | | |||||| ||||| |||||| | ||| || || |||| | Sbjct 2540901 ATG-TCGACGACCCTCTGCGAATATCCACAGCCACATCAAACACTGTGCC-CG-ACACGA 2540957 Query 25690 GCGT-ACCAACTTCCCTTGTGGGTTTTTCTTTTGAAAATGAAGCCCACGTAGAACTCCTC 25748 | | |||| ||| || ||||| || | || || ||||| | ||||| | || || Sbjct 2540958 CCCTGACCAGCTTGCCCTGTGGCTTGGTTTTCTGGAAATGTAATCCACGCAATACGCCCT 2541017 Query 25749 GGATAGAACGTGAATGGTTATCTTGGACAAAG 25780 | || |||||||| || || || |||||| Sbjct 2541018 TGGCCGATCGTGAATGATTGTCCTGCACAAAG 2541049 >seq1 Length=7344524 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 26582 GAACCATCACCTAGAAGATTTACAAAATTAATTTGATCTTCTGGTGTTGTAATTATTAGT 26641 || |||||||| || || || | ||||| |||||| || || | || || || Sbjct 5415626 GAGCCATCACCCAGCAGCTTCTCGAAATTCGGAAGATCTTTGGGGGTAGAGATAATCAGG 5415567 Query 26642 ATTTCCCTAATTCCAGAAAGCATTAGGACAGAGAGTGGATAATAAATCATAGGTTTATCG 26701 || || | ||| || | ||| | | |||||||| ||||| ||||| ||||||||| Sbjct 5415566 ATGTCACGAATACCCGCCGCCATCAAGGTGGAGAGTGGGTAATAGATCATGGGTTTATCG 5415507 Query 26702 TAAATTGGTAATAGTTGTTTACTAACCCCTTTAGTAACTGGGTAAAGCCTTGTTCCACTA 26761 |||| || | || || ||||| || || || | ||| ||||| | |||||| Sbjct 5415506 TAAACAGGCATCAGCTGCTTACTTACGGCTAGTGTTAGTGGATAAAGGCGGGTTCCAAGT 5415447 Query 26762 CCACCTGCTAAGATAATACCTTTCATA 26788 ||||| || | ||| |||||||||||| Sbjct 5415446 CCACCAGCGAGGATGATACCTTTCATA 5415420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475426049811840