Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 seq4 87.8 2e-12 seq455 82.4 7e-11 seq412 82.4 7e-11 >seq6 Length=3173221 Score = 98.7 bits (108), Expect = 1e-15 Identities = 200/294 (68%), Gaps = 5/294 (2%) Strand=Plus/Plus Query 115160 TTTGCGATCGCATTGATAGTCAGGTCCCGGCGGGCCAAGTCCTCTTCGATGGTCACATCT 115219 || || ||||||||||| ||||||||||| || |||||||| |||| ||| ||||| Sbjct 1304267 TTGGCTATCGCATTGATGGTCAGGTCCCGTCGCCGCAAGTCCTGCTCGAGGGTGACATCC 1304326 Query 115220 GG-GCTGAACATAACTTCGAAATCGTGGTATCCGTCCCCGGTAGAGCGCTCTTTACGTGC 115278 || || | | ||| ||| ||||||| ||| ||| |||||| | || || Sbjct 1304327 GGTGCGCTATA-AACCGTAAAACCGTGGTAGCCGCGCCCCTCTTTGCGCTCGGTGCGAGC 1304385 Query 115279 CAGTGCATACTCTTCCTTTGTCTCTGGGTGCAGGTACACCGGGAAGGCAGCGCCGTGCGG 115338 ||| ||||| |||||| || |||||||| | ||||| ||| | ||||| | | Sbjct 1304386 CAGGGCATATTCTTCCCGGGTGCGGGGGTGCAGAAAGACCGGAAAGTCCGCGCCCACCTG 1304445 Query 115339 CATACCGAACCCCAGAGACAGCATTTCTTCATGGGTTGAGCCAACAACCACGTAATCACG 115398 | ||||||| | |||||||| | | || | ||| || ||||| | || || Sbjct 1304446 TTT---GAACCCCTTGGCAAGCATTTCCTTTGGTGTCGCGCCGACCACCACCCAGTCCCG 1304502 Query 115399 GTCCTTGCTCGGAACACCCATCAGTTCATCGCGGACTGCTCCGCCGACCAAATA 115452 ||||||| | || |||| | ||| || || || || ||||| |||| ||| Sbjct 1304503 GTCCTTGACCTCAAGGCCCAGTAATTCGTCACGAACGGCACCGCCAACCAGATA 1304556 >seq4 Length=3599618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 || || |||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 1454028 GCCGGCTTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGTAGGTCGACGGTTCGAAT 1454087 Query 148194 CCTGCATCCAGCACCA 148209 || || || || ||| Sbjct 1454088 CCGTCAGCCGGCTCCA 1454103 >seq455 Length=62500 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 148140 TTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTGCA 148199 ||||||||||||||||||||||||| || ||||||| |||||| |||||||| |||||| Sbjct 19132 TTAGCTCAGTTGGTAGAGCAACTGACTTTTAATCAGTGGGTCGCAGGTTCGAATCCTGCA 19073 >seq412 Length=80000 Score = 82.4 bits (90), Expect = 7e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 148140 TTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTGCA 148199 ||||||||||||||||||||||||| || ||||||| |||||| |||||||| |||||| Sbjct 39639 TTAGCTCAGTTGGTAGAGCAACTGACTTTTAATCAGTGGGTCGCAGGTTCGAATCCTGCA 39580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 486024352836480