Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq5 131 5e-25 seq1 120 1e-21 seq6 118 3e-21 seq4 102 3e-16 seq2 95.1 4e-14 >seq5 Length=3486096 Score = 131 bits (144), Expect = 5e-25 Identities = 289/428 (68%), Gaps = 4/428 (1%) Strand=Plus/Plus Query 188763 TAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGC 188822 |||| |||| | |||| || || |||| ||||| ||| | || || | ||| | || Sbjct 1543642 TAATATTCTGCTGATTGGACCAACCGGTTGCGGTAAGACACTGTTGGCAGAGACACTCGC 1543701 Query 188823 T-GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTTAACAGAAGCTGGTT 188881 | ||| || | |||| || | | || |||||||||| | ||||| ||||| |||| Sbjct 1543702 TCGAT-TGCTCAATGTTCCCTTTACCATTGCTGATGCAACCACATTAACTGAAGCGGGTT 1543760 Query 188882 ATGTAGGTGAAGATGTGGAAAACGT-ATTGCTTCGTTTAATCCAAGCAGCTGATTACGAT 188940 | || || |||||||| || ||| | ||| | | | || || |||||||| Sbjct 1543761 ACGTCGGCGAAGATGTTGAGAACATTATTCAAAAGCTGCTGCAAAAGTGC-GATTACGAC 1543819 Query 188941 ATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAA 189000 |||| || | || || || || ||||||||| | || ||||| | | ||| Sbjct 1543820 GTCGAGAAGGCCCAGATGGGTATCGTTTACATCGATGAAATCGACAAAATATCGCGTAAA 1543879 Query 189001 TCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTA 189060 || || | | ||||||| || || ||||| || || || || || |||||||| || | Sbjct 1543880 TCTGACAACCCATCCATCACTCGGGATGTTTCCGGTGAGGGCGTTCAGCAAGCATTGCTC 1543939 Query 189061 AAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCAC 189120 || | |||||||||||||| || ||||||||||| ||||| | || ||||| || Sbjct 1543940 AAGCTTATTGAAGGTACAGTAGCTTCCGTTCCTCCTCAGGGTGGCAGGAAGCACCCACAG 1543999 Query 189121 CAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGAT 189180 || || | ||| | |||| || | || || | ||||| ||||| || |||| | Sbjct 1544000 CAGGAGTTCCTTCAGGTAGACACCTCCAACATTCTATTTATCTGCGGTGGTGCATTTGCT 1544059 Query 189181 GGTCTTGA 189188 || || || Sbjct 1544060 GGCCTGGA 1544067 >seq1 Length=7344524 Score = 120 bits (132), Expect = 1e-21 Identities = 285/424 (67%), Gaps = 10/424 (2%) Strand=Plus/Plus Query 188773 TTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTA 188832 || || |||| ||| ||| | || ||||| || | || | || | ||| ||| | Sbjct 5832400 TTTGTGGGCCGTACCGGTACCGGAAAAACCTTGCTGGCGAAGACGATCGCTCGCATGCTG 5832459 Query 188833 CATGTACCTCTAGCTATCTCTGATGCAACT-TCTTTAACAGAAGCTGGTTATGTAGGTGA 188891 |||||||| | || ||| ||||| || |||||| | ||||||||||| || || || Sbjct 5832460 AATGTACCTTTCGCGATCGTAGATGCTACGGTCTTTACC-GAAGCTGGTTACGTGGGCGA 5832518 Query 188892 AGATGTGGAAAACGTAT--TGCTTCGTTTAATCCAAGCAGCTGATTACGATATCGAATTA 188949 ||| ||||| | |||| || ||||| | || | | || || ||| | || | Sbjct 5832519 AGACGTGGAGA--GTATCCTGAGCCGTTTGCTACAGGTATGCGACTATGATGT--AACTG 5832574 Query 188950 --GCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAA 189007 || || || || || || || || ||||| | |||||| | ||| | || ||||| | Sbjct 5832575 CTGCCGAGCGCGGTATCGTCTACATTGATGAGATCGATAAAGTAGCTCGTAAGTCAGATA 5832634 Query 189008 GCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCA 189067 | | |||||||| ||||| || || ||||| || || || || | | ||||| Sbjct 5832635 ACCCCAGTATTACCCGCGATGTTTCGGGTGAAGGCGTGCAACAGGCGCTGCTGAAAATGC 5832694 Query 189068 TTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAA 189127 | || || |||| || || || ||||| || || || ||||||||||| | || | Sbjct 5832695 TGGAGGGAACAGATGTAAATGTACCTCCGCAGGGGGGGCGTAAACACCCCGAGCAGAAGC 5832754 Query 189128 TGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTG 189187 || | |||| |||| | |||||| |||| | ||| || || ||||||||| | | Sbjct 5832755 TGGTGAAAATCAATACCAGCAATATCCTGTTCGTATGTGGCGGTGCTTTTGATGGTATCG 5832814 Query 189188 AAAA 189191 |||| Sbjct 5832815 AAAA 5832818 >seq6 Length=3173221 Score = 118 bits (130), Expect = 3e-21 Identities = 222/324 (69%), Gaps = 2/324 (1%) Strand=Plus/Plus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || ||||||||||| || ||||| ||||| || ||| | | | || | || | | Sbjct 2223072 ACTGAAGCTGGTTACGTTGGTGAGGATGTCGAGAACATCATCCAGAAGTTGCTGCA-GAA 2223130 Query 188929 GCT-GATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAA 188987 | ||||||||| |||| || | || || ||||| ||||||||||| | || || Sbjct 2223131 GTGCGATTACGATGTCGACAAGGCCCAGCGCGGTATTGTCTATATCGATGAGATTGACAA 2223190 Query 188988 AATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACA 189047 ||| | | || ||||| | | | ||||||||||| ||||| || ||||| || || || Sbjct 2223191 GATTTCCCGCAAGTCAGACAACCCGTCCATTACCCGGGATGTTTCCGGCGAGGGTGTTCA 2223250 Query 189048 GCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCG 189107 ||| || | | || | || ||||| || |||||| || || || || |||||||| Sbjct 2223251 GCAGGCACTTCTGAAGCTGATCGAAGGCACCGTTGCGTCGGTCCCGCCACAGGGTGGTCG 2223310 Query 189108 TAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGG 189167 ||||| || || || ||| | || | | ||||| || || ||||||| ||| Sbjct 2223311 CAAACATCCGCAGCAGGAATTCCTGCAGGTTGATACCGGCAACATGCTGTTTATCTGTGG 2223370 Query 189168 TGGAGCGTTTGATGGTCTTGAAAA 189191 ||| || |||| || || || || Sbjct 2223371 TGGTGCTTTTGCGGGCCTCGACAA 2223394 >seq4 Length=3599618 Score = 102 bits (112), Expect = 3e-16 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || || || ||||| || || |||||||||||||| | | || || | |||| || Sbjct 3228794 ACCGAGGCCGGTTACGTCGGGGAAGATGTGGAAAATATTATACTCCGCCTTCTCCAGGCC 3228853 Query 188929 GCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAA 188988 || || | || | || || ||||| || || | ||| | ||||| | |||||| Sbjct 3228854 GCCGACTTTGACGTGGAGCGTGCCGAACGGGGCATCATTTATGTGGATGAGATCGATAAA 3228913 Query 188989 ATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAG 189048 || | | | ||| | || | ||||||||||| ||||| || || || || || ||| Sbjct 3228914 ATCGGTCGCAAAACCGAGAATGTGTCCATTACCCGCGATGTCTCAGGTGAGGGCGTTCAG 3228973 Query 189049 CAAGCTTTATTAAAAATCATTGAAGGTACAGT-TGCGAAAGTTCCTCCTCAAGGTGGTCG 189107 || || || | || ||| ||||||| | || ||| || |||||||| || |||||||| Sbjct 3228974 CAGGCCCTACTTAAGATCCTTGAAGGAAGCGTGTGC-AACGTTCCTCCCCAGGGTGGTCG 3229032 Query 189108 TAAACACCCTCACCAAGA 189125 || ||||| || || || Sbjct 3229033 CAAGCACCCCCAGCAGGA 3229050 >seq2 Length=6328565 Score = 95.1 bits (104), Expect = 4e-14 Identities = 219/330 (66%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 188869 ACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGCA 188928 || ||||| ||||| || || || |||||||||||| | | || | | ||| | Sbjct 3321003 ACCGAAGCCGGTTACGTGGGCGAGGATGTGGAAAACATCATCCTGAAACTGTTGCAATCG 3320944 Query 188929 GCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAAA 188988 ||||| ||| || |||| ||| | || || || || |||||||| || || || || Sbjct 3320943 GCTGACTACAATGTCGAGCGCGCGCAGCGCGGCATCGTCTATATCGACGAGGTCGACAAG 3320884 Query 188989 ATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACAG 189048 || | || | || | | || || ||||| || || || || ||||| || ||| Sbjct 3320883 ATCAGCCGCAAGGCCGACAATCCGTCGATCACCCGGGACGTGTCCGGTGAAGGCGTGCAG 3320824 Query 189049 CAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCGT 189108 || || | | |||||||| ||||| || ||||| || || || || || || || Sbjct 3320823 CAGGCACTCCTGAAAATCATGGAAGGCACCGTTGCCTCCGTGCCGCCGCAGGGCGGACGC 3320764 Query 189109 AAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGGT 189168 || || || || || ||| | || | | || || || || ||| |||| || || Sbjct 3320763 AAGCATCCGCAGCAGGAATTCCTGCAGGTTGACACGACCAACATCCTGTTCATCTGCGGC 3320704 Query 189169 GGAGCGTTTGATGGTCTTGAAAACATTATC 189198 || || |||| ||||| || || |||||| Sbjct 3320703 GGTGCTTTTGCCGGTCTGGACAAGATTATC 3320674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591895469870336