Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_024146.1 Length=56702 Score E Sequences producing significant alignments: (Bits) Value seq493 190 7e-44 >seq493 Length=52014 Score = 190 bits (210), Expect = 7e-44 Identities = 173/218 (79%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 55685 GGTGCGCATACGCATAGTCTGAGCGGTTCAACAGGCTCAGCTGGTGCTCATGCCCACACA 55744 || || ||| | || |||||||||||||||||||| | || |||||||||||||||||| Sbjct 37299 GGGGCTCATGCTCACAGTCTGAGCGGTTCAACAGGGGCCGCGGGTGCTCATGCCCACACA 37358 Query 55745 GGTGGTTTAAGGATGAACAGTGGTGGTTGGGACCAATACGGATCAATAACCGTTCCGGCA 55804 |||||||||||||||||||| ||| ||| || || ||| || |||| || | | | Sbjct 37359 AGTGGTTTAAGGATGAACAGTTCTGGCTGGAGTCAGTATGGAACAGCAACCATTACAGGA 37418 Query 55805 AGTGTATCCACGGTTAAAGGAACCAACCAGCAGGGAGCTGGTTATTGTGCGAAAACAGAC 55864 ||| ||||||| ||||||||||||| | ||||| || ||||| ||||||| ||| Sbjct 37419 AGTTTATCCACAGTTAAAGGAACCAGCACACAGGGTATTGCTTATTTATCGAAAACGGAC 37478 Query 55865 AGTCAGGGCAACCACACTCACTCTTTATCTGGTACTGC 55902 |||||||||| ||||| |||||| || || ||||| || Sbjct 37479 AGTCAGGGCAGCCACAGTCACTCATTGTCCGGTACAGC 37516 Score = 140 bits (154), Expect = 1e-28 Identities = 118/145 (81%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 55685 GGTGCGCATACGCATAGTCTGAGCGGTTCAACAGGCTCAGCTGGTGCTCATGCCCACACA 55744 || || ||| | || |||||||||||||||||||| | || |||||||||||||||||| Sbjct 33165 GGGGCTCATGCTCACAGTCTGAGCGGTTCAACAGGGGCCGCGGGTGCTCATGCCCACACA 33224 Query 55745 GGTGGTTTAAGGATGAACAGTGGTGGTTGGGACCAATACGGATCAATAACCGTTCCGGCA 55804 |||||||||||||||||||| ||| ||| || || ||| || |||| || | | | Sbjct 33225 AGTGGTTTAAGGATGAACAGTTCTGGCTGGAGTCAGTATGGAACAGCAACCATTACAGGA 33284 Query 55805 AGTGTATCCACGGTTAAAGGAACCA 55829 ||| ||||||| ||||||||||||| Sbjct 33285 AGTTTATCCACAGTTAAAGGAACCA 33309 Score = 86.0 bits (94), Expect = 2e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 56015 ACAGTTAACGCAACTGGTAACACGGAGAACACCGTTAAGAACGTTGCATTCAACTATATT 56074 || |||||||| | |||||| |||| |||||||| || ||| ||||||| ||||||||| Sbjct 37629 ACCGTTAACGCTGCGGGTAACGCGGAAAACACCGTCAAAAACATTGCATTTAACTATATT 37688 Query 56075 GTGAGGGCTGCTTAATGTCTTTTGAAATGAGT 56106 |||||| ||| ||||| | || ||||||| Sbjct 37689 GTGAGGCTTGCATAATGGCATTCAGAATGAGT 37720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181323223834176