Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_024367.1 Length=75028 Score E Sequences producing significant alignments: (Bits) Value seq273 304 6e-78 >seq273 Length=166498 Score = 304 bits (336), Expect = 6e-78 Identities = 498/710 (70%), Gaps = 12/710 (2%) Strand=Plus/Plus Query 45854 GCCAGATTCACTGAACCAAGCAGACAGGCACCATACGGAGGCAGAGGCTGCTCACCACAT 45913 |||| || || || || || || ||||| ||||| || ||||| ||||| || || || Sbjct 146414 GCCAAGTTGACCGAGCCCAGAAGGCAGGCCCCATAGGGCGGCAGCGGCTGTTCCCCGCAG 146473 Query 45914 GGATTCGTTGCTGCAATGGTTTCAAGGAACCAGAGATTGTTCTCCTTGTTGATGCGATCA 45973 || || || || ||||||||||| | | || ||||| ||| ||||||||| || Sbjct 146474 GGGTTGGTCGCGGCAATGGTTTCGCAATAGCTCAGGTTGTTGGCCTGGTTGATGCGGTCG 146533 Query 45974 ATGAAGATCACACCGGGTTCAGCGTAGTTGTAGGTGTTC--CATAGAATCGCTTCCCAGA 46031 |||||||||||||| || || ||||| | ||||| | ||| || || |||| | | Sbjct 146534 ATGAAGATCACACCCGGCTCGGCGTAATCATAGGTCGCCTGCAT-GATGCGGTTCC-ACA 146591 Query 46032 GATCCTTTGCTTTGATGGTGTCGTAGACCTTACCATCGAACATCAGATCCCAGTCAGAAT 46091 |||| || | | |||| |||||||| || || || | ||| |||||| || Sbjct 146592 GATCGCGCGCCTGAAGCGTGTGATAGACCTTGCCGTCAAAGACCAGGTCCCAG---GACC 146648 Query 46092 CATGAGCC---ACCGCTTCCATGAACTCATCAGTACAGAGCACTGACACGTTGAAGTTAC 46148 | | ||| || || |||||||| || || || || |||| |||||| | | Sbjct 146649 CGTCGGCCTTCACGGCCTCCATGAAAGGGTCGGTGACCAGGACAGACATGTTGAACATGC 146708 Query 46149 GAAGACGCAGAGGATCCTGCTTGGCTTGGACGAATTCCATGATGTCCGGATGGTCACACC 46208 | || || ||||| |||||| || ||||| | | |||||| || || || | Sbjct 146709 GCAGCCGGGCCGGATCGGACTTGGCGGCGATGAATTGCTCCACGTCCGGGTGATCGCAGC 146768 Query 46209 GCATGGTGGCCATCATAGCACCCCGTCGGCTGCCTGCTGACATGATGGTTTTGCACATCG 46268 ||||||| |||||||| || ||||| || |||||| |||||||| || ||||||| Sbjct 146769 GCATGGTCGCCATCATCGCGCCCCGGCGCGAGCCTGCGGACATGATCGTGCGACACATCG 146828 Query 46269 AGTCCCAGACATCCATGAATGTGAGAGGACCGCTGG-AGAAGCTCTCCACGCCCTTCACA 46327 |||||||||||||||||| | || || || || | || | |||||||||||||| Sbjct 146829 CGTCCCAGACATCCATGAAGGACAGCGGGCCCGAGGCATCCGC-CGCCACGCCCTTCACA 146887 Query 46328 GGTGCTCCCTTCGGACGAAGGGTACTGAAGTCATAACCAATCCCACCGCCTTGCTGCATC 46387 || ||||| || || | ||| ||| ||||| || || || ||||| |||||||| Sbjct 146888 TCCGCACCCTTGGGCCGGATGGTCGAGAAATCATAGCCGATGCCGCCGCCCTGCTGCATG 146947 Query 46388 GTGAGAGCAGCTTCCTTGAGCATATCGAAGATACCATCAAGGCTGTCAGGGATGGTTCCC 46447 || || || || || || ||||| ||||| || || | | | |||| ||||| || ||| Sbjct 146948 GTCAGCGCGGCCTCTTTCAGCATGTCGAAAATGCCGCCCATGTTGTCGGGGATCGTGCCC 147007 Query 46448 ATGACATAGCAGTTGAACAAGGTCACGTTGCGTCCCGTACCTGCACCGGAATTAATCCGT 46507 ||||| | |||||||||| ||||| ||||| | || || || || | | ||||| Sbjct 147008 ATGACGAAACAGTTGAACAGCGTCACCTTGCGCGCGGTGCCGGCCCCTGCGGTGATCCGC 147067 Query 46508 CCTGCTGGTAGGAACTTGAAATCATACAGGGCTTTGAAGAACCGTTGTTC 46557 ||||| || ||||||| |||||| | ||| || ||||||| | ||| Sbjct 147068 CCTGCGGGCAGGAACTGGAAATCCTCCAGCGCGCCATAGAACCGCTCTTC 147117 Score = 104 bits (114), Expect = 1e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 44999 AGGACGGATCCTGTCACGTCGTTTGGCCGATAGGTTGTGCAACCTTTACAGCCAGTTTCA 45058 |||||||| || ||||||||||| || || ||||| ||||| || || ||||| || || Sbjct 145592 AGGACGGACCCGGTCACGTCGTTCGGACGGTAGGTCGTGCAGCCCTTGCAGCCGGTGTCC 145651 Query 45059 AAGGCATGGTCATAGACCGCCTTGAAGTCTTCGAAGGAGATGTCTTCCGGAAGGTTGACA 45118 |||| | ||||| |||||||||| || ||||| ||||| || || ||||| Sbjct 145652 CAGGCTTCCATGTAGACGTCCTTGAAGTCGTCAAAGGAAATGTCCTCGGGGCAGTTGATC 145711 Query 45119 GTCTTGGAGATGGACGAGTCCACCCACTTCTG 45150 ||||| ||||| || ||| ||||| ||||| Sbjct 145712 GTCTTCGAGATCGAGCTGTCGACCCATTTCTG 145743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 239962659214028