Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 98.7 2e-15 >seq1 Length=7344524 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 110686 TTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCA---AGGTGGTA 110742 |||| || ||||| | ||| |||||||||||||| || || | || ||||||| Sbjct 2685303 TTGTACCGATGTTGAAAGTATTCAACGACACTGCCCGCTACGTTGACCAGGGTGGTGGTA 2685362 Query 110743 AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCT 110802 || | || || | || ||||| || || || || ||||| ||||| |||| || ||| Sbjct 2685363 AGCGTAAAGGTGCCTTCGCTATTTACCTGGAGCCCTGGCACGCAGATGTATTCGACTTCC 2685422 Query 110803 TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAA 110862 | ||||| ||||| || || ||||| | || ||||| || || || || | Sbjct 2685423 TGGAACTGAAGAAAAACCACGGTAAGGAAGAGTTGCGCGCTCGTGACTTGTTCTACGCTA 2685482 Query 110863 TGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCT 110917 |||||||| | ||||| |||||| || || ||||||| ||| ||||| || Sbjct 2685483 TGTGGATTCCGGATTTGTTCATGCGCCGCGTGAAAGAAAACGGCGACTGGTCGCT 2685537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186801669179452