Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq36 113 1e-19 seq53 96.9 8e-15 >seq36 Length=729648 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| |||| ||||| || ||| Sbjct 221826 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTGGACGTGGAGCCCTCGGAC 221885 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || ||| || || Sbjct 221886 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCGCCTGATCAGCAG 221945 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | ||| || ||| |||||| || Sbjct 221946 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACTCTGAGCGACTACAACATC 222005 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||||||||| ||||| ||||||||| Sbjct 222006 CAGAAAGAGTCGACTCTCCACCTTGTT 222032 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||||||||| ||||| ||||||||||||| || ||||| || ||| | || || || Sbjct 222032 AACAAGGTGGAGAGTCGACTCTTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCGTCCTC 221973 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||| ||||||||||| || || || ||| Sbjct 221972 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGA 221939 >seq53 Length=625924 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| || ||| Sbjct 125164 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGAC 125105 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 125104 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 125045 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | ||| |||||| || Sbjct 125044 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACATC 124985 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||||| || ||||||| || Sbjct 124984 CAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCG 124947 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| || ||| Sbjct 125392 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGAC 125333 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 125332 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 125273 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | ||| |||||| || Sbjct 125272 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACATC 125213 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||||| || ||||||| || Sbjct 125212 CAGAAGGAGTCGACGCTCCACCTCGTGCTGAGACTGCG 125175 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206184 CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATC 206243 ||| || ||||| || || || ||||| | || ||||| || ||||| |||| Sbjct 125609 CAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGACACGATCGACGG 125550 Query 206244 AGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||| || || || || || || |||||| || | || ||||| Sbjct 125549 CGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTGATCTT 125490 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| |||||| |||| || || | || | ||| |||||| ||||||| ||||| Sbjct 125489 CGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACATCCAGAAGGAGTC 125430 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCG 206390 || || ||||| || ||||||| || Sbjct 125429 GACGCTCCACCTCGTGCTGAGACTGCG 125403 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || ||||| || ||| Sbjct 124936 CAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACGCTCGACGTGGAGCCCTCGGAC 124877 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||||| ||||| || || || || || || |||||| || Sbjct 124876 ACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAG 124817 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| || || | || | ||| |||||| || Sbjct 124816 CGCCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTCAGCGACTACAACATC 124757 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||||| ||||| || || ||||| || |||| || || Sbjct 124756 CAGAAGGAGTCGACGCTCCACCTCGTGCTGAGGCTGCG 124719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181809715998172