Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025427.1 Length=54506 Score E Sequences producing significant alignments: (Bits) Value seq2 98.7 3e-16 >seq2 Length=6328565 Score = 98.7 bits (108), Expect = 3e-16 Identities = 525/811 (65%), Gaps = 51/811 (6%) Strand=Plus/Minus Query 3407 CCGATGGACGCGACTGATGTGCGTGGCATCTCCCTTCTCGCGCCGGCGTTTCGCAAGCAC 3466 |||||| |||||| |||||||| ||||| || | || ||| | || || || | || Sbjct 3141499 CCGATGTGCGCGACCGATGTGCGCGGCATTTCTGTCCTTGCGTCAGCATTCCGGACCCAT 3141440 Query 3467 ATACAGCATGAGATGCTCGAT-GACGCGACCCTGCAGATGGCGGTTCTTCAAACCATCCT 3525 || |||| ||||| | | ||| ||||| || |||||| ||| || | || || ||| | Sbjct 3141439 ATTCAGCGTGAGAAGTT-GATCGACGCAACGTTGCAGACTGCGATTTTGCAGACGATCTT 3141381 Query 3526 CGCGGTGACGCTCACAAGCGAGAGCCCGAGTGCAGATGCGTTTGAAGCGCTCGAGGCTTT 3585 || | ||||| || || || | |||| || || ||||||||||| ||| | | Sbjct 3141380 TGCCGCAACGCTTACCAGTGAAAAGCCGACAATGGAGGCTTTTGAAGCGCTTGAGACGCT 3141321 Query 3586 GAAAGAGACTGGCGCAGACAACGCGGCGCA----AAT-CGCCACGGACTTCGCCAATTAT 3640 || || || || | | || ||||| | | ||||| ||| | | | ||| Sbjct 3141320 CAAGGA---TGTCGATGCTATCG--GCGCATCAGACTACGCCAAGGAGTATATCGACTAT 3141266 Query 3641 TTCGAGTCGCAGC-TCGATCGGGCGAGCAACTCCAAGATCAATGTCAGCA---GCGACGA 3696 || || | ||| | || ||| ||| |||| | |||| | |||| || Sbjct 3141265 CTCAAGG-GAAGCCTAGACGCCGCG-GCAG----AAGAA-ACCATCAGGATTGGCGAGGA 3141213 Query 3697 TCCGACCGTCTCGCACCTGGCACCCGGTGAAAAACTTGGCATTGAAACAGCTCGC--ATT 3754 | ||| ||||||||||| || || ||||| || | ||| || ||| || | Sbjct 3141212 CGCACGCGTGTCGCACCTGGCGCCTGGCGAAAAGCTCG--ATTTCAAAAGCGCGGGAACA 3141155 Query 3755 CCGGGCGGCGAATATTTGCCTTTTTC---ATCGAGCCTGTCGCGCGACATGGCGCGGGCA 3811 ||||| | |||| || || ||| | || || | || ||||| | ||||||||| Sbjct 3141154 CCGGG-GCCGAAC-TTCGCGCCATTCGAAAGCGGGCTT-TCACGCGAGACAGCGCGGGCA 3141098 Query 3812 ATGGGTGTCACCTACGGCGGCCTGACGATGGACTACTCCGATTCCACCTATTCTTCGGTT 3871 || ||| |||||||||||| | || |||||| || | ||| | | |||||| || || Sbjct 3141097 ATCGGTATCACCTACGGCGCTTTAACCATGGACCACACAGATGCAAGCTATTCGTCTGTG 3141038 Query 3872 CGGATGGAAACATCGACGCTATGGCCCGTCGTTATGCGTCGTCGCGAGCGGATCGCGGCG 3931 |||||||||| || || | ||||| |||||| ||| || ||||| | ||| | Sbjct 3141037 CGGATGGAAAACGCGTCGATCTGGCCAGTCGTTGAGCGCCGACGCGAAAACAGCGCAGTT 3140978 Query 3932 CCGCATTACCAGAATCCC---TACGAGCATTGGCTTGAAGAGGAGGTGTTCACCGGCCGT 3988 || ||| | | | || ||||| ||||||||| || || | | || || || Sbjct 3140977 CC-CAT--CGAAAGGGCCGTTTACGAAGGTTGGCTTGATGAAGAAATTTATACTGGTCGA 3140921 Query 3989 ATCCCGTTCAAGGGCGGATATGAGGCTTTCGCCGCAAACCGG--GTCCGCA---TCTGCT 4043 | || ||| || || ||| || |||| |||||||||| | ||| | |||||| Sbjct 3140920 CTGCCATTCGTTGGGGGTTATTCCGCGTTCGACGCAAACCGGGAGGCCGTAGTCTCTGCT 3140861 Query 4044 GGGCGCTCTGGCAAGGTCCAGCCAAGCCGTCGGCCGACGACGGCAAGGCCGCTAAGGCGT 4103 | || || || ||| | ||||| | || || || |||| |||| || | Sbjct 3140860 --ACATTC---CAGGGACCACCGAAGCCTACAGCTGATGATCACAAGAGCGCTCGCGCAT 3140806 Query 4104 CCTCCGAGCGGATCGTCAACGGTACGA-CGACGCTGGCGCAGGAATGCGCGGATTTGGGC 4162 | ||||||| | ||||| || | | || || | | ||| || || |||||| Sbjct 3140805 CGACCGAGCGATTGCAGAACGGCACCAGCTCCGTTGAAG-ACGAAGCAGCTGACTTGGGC 3140747 Query 4163 GTCGATCCGGACGAAACGTTCGAGCAGCGCC 4193 || ||||| |||||| ||||| | ||||| Sbjct 3140746 GTTGATCCTGACGAACTATTCGATCGGCGCC 3140716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174296084918112