Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025428.1 Length=59601 Score E Sequences producing significant alignments: (Bits) Value seq371 170 7e-38 seq310 140 1e-28 seq413 82.4 3e-11 >seq371 Length=98968 Score = 170 bits (188), Expect = 7e-38 Identities = 166/214 (78%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 10725 CAGCTACCGCATCACCGCCTCCGAACTGCGCCAGTTCATCGAGCGCGTCGAGCGCCTGGA 10784 || ||||||| | ||||| |||| |||||||||||||||| || |||||||| ||||| Sbjct 4812 CAACTACCGCGTGACCGCGGGCGAATTGCGCCAGTTCATCGAACGGGTCGAGCGGCTGGA 4753 Query 10785 GGTCGAGAAGAAGGACATCGCGGACCAGGTGAAGGAGGTCCTGGCCGAGGCCAAGGCGCG 10844 | ||| ||||||||| | || || ||| | ||||| ||| ||||||| ||||||| ||| Sbjct 4752 AGCCGAAAAGAAGGACCTGGCCGAGCAGATCAAGGAAGTCATGGCCGAAGCCAAGGGGCG 4693 Query 10845 GGGCTACGACACCAAGGTCATGCGCAAGATCATCGCAGAGCGCAAGCGCAGCCGCGACGA 10904 || || ||||||||||||||||||||| | || | |||||||||| | ||||| Sbjct 4692 CGGGTATGACACCAAGGTCATGCGCAAGGTGATTTCCCTGCGCAAGCGCGACAAGGACGA 4633 Query 10905 CATCAACGAGGAGGAAGCCGTCCTCGAACTGTAC 10938 |||| ||| || || || || || || ||||| Sbjct 4632 CATCGCCGAAGAAGAGGCGGTGCTTGAGATGTAC 4599 >seq310 Length=138217 Score = 140 bits (154), Expect = 1e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 10747 GAACTGCGCCAGTTCATCGAGCGCGTCGAGCGCCTGGAGGTCGAGAAGAAGGACATCGCG 10806 || |||||||||||| | || || ||||||||||||| | |||||||||| ||| || Sbjct 55009 GAGCTGCGCCAGTTCGTTGAACGGTTCGAGCGCCTGGACGAAGAGAAGAAGGCCATTGCC 54950 Query 10807 GACCAGGTGAAGGAGGTCCTGGCCGAGGCCAAGGCGCGGGGCTACGACACCAAGGTCATG 10866 || || ||| |||||| |||| |||||||||| ||| || |||||| |||||| || Sbjct 54949 GAGCAACAGAAAGAGGTCATGGCAGAGGCCAAGGGGCGTGGATACGACGTCAAGGTGCTG 54890 Query 10867 CGCAAGATCATCGCAGAGCGCAAGCGCAGCCGCGACGACATCAACGAGGAGGAAGCCGTC 10926 |||||| | ||||| |||||||||| | |||| ||| |||||| || || || Sbjct 54889 CGCAAGCTGATCGCCCTGCGCAAGCGCGACGAAAACGATATCGCCGAGGAAGAGGCGGTA 54830 Query 10927 CTCGAACTGTAC 10938 ||||| ||||| Sbjct 54829 CTCGATATGTAC 54818 >seq413 Length=79672 Score = 82.4 bits (90), Expect = 3e-11 Identities = 124/170 (73%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 18162 TAGTTGTCGTGCCAGGTCAGTTGCACGTCGCCGCGCCCGTAGTAGACGTGGCCG-GTGGT 18220 ||||| ||| |||||||||| || |||| |||||||||||||| || || ||| |||| Sbjct 70141 TAGTTATCGAGCCAGGTCAGCTGGACGTGTCCGCGCCCGTAGTAAACATGACCGTGTGGC 70082 Query 18221 CGGGTGGGGTTTGGCATATTGGGCGACCGC-CGATTTCGGCCCGCGCTTGGCG-GCCAGC 18278 | || |||| || |||| ||||| || | ||| ||||| || |||| ||||| Sbjct 70081 CCAGT-CGGTTGAGCGTATTTAGCGACTGCGCTGTTTGGGCCCCTGC--GGCGCGCCAGG 70025 Query 18279 TTGTTCACCGCCTGCCGAGCCGCAGCGTCGGAACGGGCGAAACCTTCGCG 18328 |||||||| || | || || | ||||| | | ||||| ||||| || Sbjct 70024 TTGTTCACTGCACGACGCGCACCGGCGTCTGTGCTCGCGAAGCCTTCACG 69975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190599943195592