Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025429.1 Length=156446 Score E Sequences producing significant alignments: (Bits) Value seq3 140 3e-28 seq4 131 2e-25 seq201 129 6e-25 seq2 129 6e-25 >seq3 Length=4400433 Score = 140 bits (154), Expect = 3e-28 Identities = 366/556 (66%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 || ||||| ||| | ||| | | | ||||| || || |||| ||||| ||||| || Sbjct 1995122 CAAATGCGGTTCGACCTGAGTGAGCGATTTCCACTCCTGACCACTAAGAAATTGCATTTG 1995181 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 ||||||||| ||||||||| | |||||||| |||||||| || | | | Sbjct 1995182 CGGTCGATCATTGTCGAACTCTTATGGTTCCTACGCGGCGATACAAATGTGCGCTGGTTG 1995241 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 || || | ||| || ||||| ||||| || |||||||| | ||||| | ||||| || Sbjct 1995242 CAGGACCGCAAAGTTAAGATTTGGGACGAGTGGGCTGACGAGAATGGTGATCTCGGGCCG 1995301 Query 142432 GTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGATGACGTCACA 142491 || ||||||||||| ||| |||| || || | || | || |||| Sbjct 1995302 GTTTACGGCAAGCAATGGCGTAGCTGGGCGGCCCCGGATG--GTCGG-------GTCA-- 1995350 Query 142492 GACGAACCGATCGATCAGATCCGCCGGATCATTACTGACTT--GAAGAAGTCTCCTCATT 142549 |||| ||||| | || | | || | | || | || | | | Sbjct 1995351 ----------TCGACCAGATTCAATGGGTGCTCGACGAAATCCGCAGCAATC--CAAACT 1995398 Query 142550 CTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTC 142609 | || ||| | ||| | || |||||||| ||||| ||| || ||||| || || | Sbjct 1995399 CCCGCCGTATGGTGGTCTCAGCCTGGAACCCCGCTGATGTCCCTGATATGGCGCTGCCGC 1995458 Query 142610 CGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCTGT 142669 | |||||| ||||||||||| | ||| | || | ||||||| |||||||| | Sbjct 1995459 CCTGTCACTGCCTGTTCCAATTCAATGTCA--TGGATGG-GCGTCTGAACTGCCAGCTTT 1995515 Query 142670 ATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTC 142729 ||||||| ||||| || ||||||||||| ||||| ||||| || || || |||||| Sbjct 1995516 ATCAGCGCTCGGCCGATATTTTCCTCGGCGTGCCGTTTAACATCGCGTCATATGCGCTTT 1995575 Query 142730 TCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGTCCACACCTTCG 142789 | || | | || || |||| ||||| | | || || || |||||||| || | Sbjct 1995576 TGACCATGATGATGGCGCGCGCCACTGGTCTCAAGCCTGGTGATTTTGTCCACACATTTG 1995635 Query 142790 GCAATTCGCACATCTA 142805 || || ||||| |||| Sbjct 1995636 GCGATGCGCACCTCTA 1995651 >seq4 Length=3599618 Score = 131 bits (144), Expect = 2e-25 Identities = 381/584 (65%), Gaps = 42/584 (7%) Strand=Plus/Plus Query 142241 TCTTCGGTCATCAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGA 142300 ||||||||| ||| || | | ||||| | | || ||||| || |||| |||| Sbjct 201521 TCTTCGGTCGCCAGGCCCGCTACGATCTGCGTGAGGGATTTCCCTGCCTAACCACAAAGA 201580 Query 142301 AGCTGCATCTGAAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACA 142360 |||| ||||| || |||||| ||| || ||||||||||||||||| || || |||| Sbjct 201581 AGCTTCATCTCCGCTCAATCATCCACGAGCTGCTGTGGTTCCTCAAAGGTGACACCAACA 201640 Query 142361 TCAAGTATCTTCACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCA 142420 ||| || || | || || ||||| |||||||| |||||||| |||| || || Sbjct 201641 TCACCTACCTGAAGGAAAACGGCGTCACCATCTGGGACGAATGGGCGGATGAAAACGGGG 201700 Query 142421 ACCTCGGACCTGTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCGTTGTCGCTGGAG 142480 ||||||| || |||||||| || |||| | |||| |||| | Sbjct 201701 ACCTCGGCCCCGTCTACGGGCGTCAATGGAGGAAATGGA-AAACC--------------G 201745 Query 142481 ATGACGTCACAGACGAACCGATCGATCAGATCCGCCGGATCATTACTGA---CTTGAAGA 142537 | |||| | || | ||||| || ||| | ||| | ||| || | | | Sbjct 201746 AGGACG-----GGCGGGTC-ATCGACCAAATCGG--GGAAC-TTATCGAAAGCCTCACCT 201796 Query 142538 AGTCTCCTCATTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACA 142597 | || || || || || ||||||||| |||| |||||| || || || || | Sbjct 201797 ACAACCCCCAATCCCGCCGCCACATCGTCTCCGCATGGAACGTGGCCGACGTGCCGGAAA 201856 Query 142598 TGGCACTTCCTCCGTGTCACATGATGTTCCAATTCCACGTCGA-----CTCGAA---GAA 142649 |||| || || || || || | | ||||| ||| ||||| | ||| || | Sbjct 201857 TGGCCCTCCCCCCTTGCCATCTCCTTTTCCAGTTCTACGTCCATGAAGCTCAAAACGGGG 201916 Query 142650 GC-------GTCTGTCATGCCAGCTGTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTC 142702 || | || || |||||||| || ||||| || || || || ||||||| Sbjct 201917 GCAAACCAGGACTCTCCTGCCAGCTCTACCAGCGCAGCGCCGATCTTTTTCTAGGCGTTC 201976 Query 142703 CGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATTGCTCGCGAATGCGGTCTGG 142762 | |||||||| || || ||||| || ||||| || || | |||| |||||| | Sbjct 201977 CCTTCAACATCGCCTCCTACGCTCTCCTCACCCATCTGGTCGCTCAAATCTGCGGTTACG 202036 Query 142763 AACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCACATCTAC 142806 | | | | ||||||||||||||||||||| || ||| ||||| Sbjct 202037 AGCCCCGGGACTTCGTCCACACCTTCGGCGATCTCCACCTCTAC 202080 >seq201 Length=246981 Score = 129 bits (142), Expect = 6e-25 Identities = 361/546 (66%), Gaps = 41/546 (8%) Strand=Plus/Minus Query 142267 CTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTGAAGTCGATCATCGTC 142326 ||||| | ||||| || || || | || ||||| ||||| ||||| || ||| | | Sbjct 14290 CTGGCGGATGGCTTCCCCCTGGTCACAACCAAGAAACTGCACCTGAAATCCATCGTGCAC 14231 Query 142327 GAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTTCACGATCACAACGTC 142386 ||||| |||||||||||| || |||||||||||||||||||| | || || ||| Sbjct 14230 GAACTGCTGTGGTTCCTCGCCGGGGATACGAACATCAAGTATCTCAAGGACAACGGCGTT 14171 Query 142387 AAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCTGTCTACGGCAAGCAG 142446 ||||||||| |||||||| || | || ||| | || || || || ||||| ||| Sbjct 14170 TCGATCTGGGACGAATGGGCGGACGAAAACGGCGATCTGGGCCCGGTTTACGGGTCGCAA 14111 Query 142447 TGGATGTCCTGGACGAACCTCGTTGTCGCTGGAGATGACGTCACAGACGAACCGATCGAT 142506 ||| ||||| ||| ||| | ||| | || | ||| | ||||| Sbjct 14110 TGGCGCGCCTGGCCGA----------CGCCG--CATG--GGCAGA-TCGACCAGATCG-- 14068 Query 142507 CAGATCCGCCGGATCATTACTGACTTGAAGAAGTCTCCTCATTCTCGTCGTCACATCGTC 142566 ||| | || ||| ||| | || || || | || || || | ||||| Sbjct 14067 -AGA--AACTGGTTCA--GATGA--TCCGCAAATCCCCCGACTCGCGCCGCCTGATCGTG 14015 Query 142567 ACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCCTCCGTGTCACATGATGTTC 142626 | || |||||||| || || |||||||| ||||| || || || ||||||| ||| Sbjct 14014 TCGGCCTGGAACCCGGCCGAGGTCGACGAGATGGCGCTGCCCCCCTGTCACACCCTGTGG 13955 Query 142627 CAATTCCACGTC---GACTCGAAGAAGCGTCTGTCATGCCAGCTGTATCAGCGTTCGGCA 142683 || | | || | | |||| || ||| |||||||| ||||||||||| Sbjct 13954 CAGGTGCGGATCTCGGGCGGGAAGCTGCACCTG------CAGCTGTACCAGCGTTCGGCC 13901 Query 142684 GACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCTTCTCACACAGCTCATT 142743 ||| |||||| ||||| || |||||||| || || |||||||| || | | ||| | Sbjct 13900 GACATGTTCCTGGGCGTGCCCTTCAACATCGCCTCTTACGCGCTGCT---TCTGGTCA-T 13845 Query 142744 GCTCGCGAATG----CGGTCTGGAACTCGGAGACTTCGTCCACACCTTCGGCAATTCGCA 142799 ||| || ||| ||| || | ||| || ||||| || || ||||| | | || Sbjct 13844 GCTGGCCCATGTCACCGGGTACGAGCCCGGCGATTTCGTGCATTCCATCGGCGACGCCCA 13785 Query 142800 CATCTA 142805 |||||| Sbjct 13784 CATCTA 13779 >seq2 Length=6328565 Score = 129 bits (142), Expect = 6e-25 Identities = 357/543 (66%), Gaps = 32/543 (6%) Strand=Plus/Minus Query 142252 CAGATGCGTTTCAATCTGGCTCAAGGCTTTCCTCTTCTCTCCACGAAGAAGCTGCATCTG 142311 || ||||| || |||| || |||| || || || || | || || |||||||| ||| Sbjct 4241269 CAAATGCGCTTTGATCTCGCCGAAGGGTTCCCGCTGGTCACGACCAAAAAGCTGCACCTG 4241210 Query 142312 AAGTCGATCATCGTCGAACTCCTGTGGTTCCTCAAAGGCGATACGAACATCAAGTATCTT 142371 ||||||||| ||| || || ||||||||| ||||| || || ||| |||||| Sbjct 4241209 CGGTCGATCATTCACGAGCTGCTCTGGTTCCTCGCCGGCGACACCAATATCGGGTATCTC 4241150 Query 142372 CACGATCACAACGTCAAGATCTGGGATGAATGGGCTGATGCCAATGGCAACCTCGGACCT 142431 | || || |||||||||||||||||| ||||| |||| || ||| | || || || Sbjct 4241149 AAGGAAAACGGCGTCAAGATCTGGGATGACTGGGCGGATGAGAAGGGCGAGCTTGGTCCG 4241090 Query 142432 GTCTACGGCAAGCAGTGGATGTCCTGGACGAACCTCG-TTGTCGCTGGA--GATGACGTC 142488 |||||||| | |||||| |||||| || | || | | || | || || | || Sbjct 4241089 GTCTACGGATACCAGTGGCGCTCCTGGCCGGCTCCCGATGGCCGTTCGATCGACCAGATC 4241030 Query 142489 ACAGACGAACCGATCGATCA-GATCCGCCGGATCATTACTGACTTGAAGAAGTCTCCTCA 142547 || | | | | || | || ||||||| | || | | || ||| Sbjct 4241029 AC---CAACCTGCTC-ACCATGATCCGC---ACCAATCCGGA----AAG----------- 4240992 Query 142548 TTCTCGTCGTCACATCGTCACCGCGTGGAACCCTGCTGAAGTCGACGACATGGCACTTCC 142607 || || | |||||| | || |||||||| || || || || ||||| || || Sbjct 4240991 ---CCGCCGCCTGATCGTCTCGGCCTGGAACCCGGCCCTGGTTGATGAAATGGCGCTGCC 4240935 Query 142608 TCCGTGTCACATGATGTTCCAATTCCACGTCGACTCGAAGAAGCGTCTGTCATGCCAGCT 142667 ||||| ||| ||||||| ||| | |||| || | || || |||||||| Sbjct 4240934 GCCGTGCCACTCCCTGTTCCAGTTCTATGTCG---CGGACGGCAAACTCTCCTGCCAGCT 4240878 Query 142668 GTATCAGCGTTCGGCAGACTGGTTCCTCGGCGTTCCGTTCAACATTGCTTCGTACGCGCT 142727 || ||||| || || || || ||||||||||| |||||||| || || || ||||| Sbjct 4240877 TTACCAGCGCTCCGCGGATGTCTTTCTCGGCGTTCCCTTCAACATCGCATCTTATGCGCT 4240818 Query 142728 TCTCACACAGCTCATTGCTCGCGAATGCGGTCTGGAACTCGGAGACTTCGTCCACACCTT 142787 | | || | |||| | | ||| || | | || |||||||||||||| || Sbjct 4240817 TTTGACCATAATGGTTGCCCAGGTCACCGGCCTCAAGCCAGGCGACTTCGTCCACACATT 4240758 Query 142788 CGG 142790 ||| Sbjct 4240757 CGG 4240755 Score = 109 bits (120), Expect = 5e-19 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 148822 GATCAGCTGCGCGGTTTCATCGAGCGTATNNNNNNNNNNGAAGAAGAGAAGAAGACGATC 148881 ||||||||||| | ||||||||||| || |||||||| || ||| || Sbjct 5456102 GATCAGCTGCGGGCATTCATCGAGCGCATTGAGCGCCTGGAAGAAGAAAAAAAGGTCATT 5456043 Query 148882 GGCGATGACATCAAGGACGTCTACGGCGATGCCAAAGGAAATGGCTTCGACACCAAGATC 148941 | ||| ||||||||||| ||||| | || |||||||||||||||| ||| || || Sbjct 5456042 GCCGACGACATCAAGGATGTCTATGCGGAAGCCAAAGGAAATGGCTATGACGTGAAAATT 5455983 Query 148942 TTGAAGAAGGTCATCAACATCCGCAAGAAGGATGAGCAGGAGCGCATGGAAGAGGAAGCA 149001 ||| |||||| ||| | | ||||||||| | ||| |||||| || || ||||| Sbjct 5455982 TTGCGCAAGGTCGTCAGCCTGCGCAAGAAGCAGCCGCATGAGCGCGAAGAGGAAGAAGCT 5455923 Query 149002 ATCCTCGATACGTATCTCGCTGCTCTCGGCATG 149034 | || ||| ||||| || ||||||||| Sbjct 5455922 GTTCTGGATCTCTATCTTCACGCGCTCGGCATG 5455890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500494620432320