Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq310 383 5e-102 seq19 127 6e-25 seq5 111 4e-20 seq413 82.4 2e-11 >seq310 Length=138217 Score = 383 bits (424), Expect = 5e-102 Identities = 944/1421 (66%), Gaps = 37/1421 (3%) Strand=Plus/Minus Query 16302 CCGCCGCCAGACATGAAGCCGTCAGAGTGGGCGCAGGCTAATATCCGCATTCCGTCTGGC 16361 ||||| || ||| | |||||||| |||||||| | |||||| ||||| ||| Sbjct 48206 CCGCCACCTGACCTAAAGCCGTCGGAGTGGGCCGAACAGAATATCAAAATTCCCATCGGC 48147 Query 16362 AACGCCGTGCCAGGACCGCTGCGCCTGGATAACGCGCCATACCAGCGCGAACCAATGGAC 16421 || || ||||| |||||| |||| | ||||||||||| || ||||||||| || ||| Sbjct 48146 AATGCGGTGCCGGGACCGATGCGGTTCGATAACGCGCCGTATCAGCGCGAAGTCATCGAC 48087 Query 16422 ATGCTGGTTGACCCTGATTGCTACCGTGTAACGCTGATGTGGGGCGCGCAGGTGGGCAAA 16481 ||| || || || ||| | || | |||| ||||||||||||||||| ||||| Sbjct 48086 ATGACGGCAGATCCGCGCTGCAATCGGATCTCGCTCATGTGGGGCGCGCAGGTTGGCAAG 48027 Query 16482 ACCATGCTGGCACTGTGCGTGCAGGCGTACAGCGTAGCCGCTGAACCGCGCAGCC-AGAT 16540 || | || || || ||||||| | | | | | | | || || | || Sbjct 48026 ACGCAGACCGCGCTTGCCGCACAGGCGTTTCGGATCGG-GTTCAGTCCCGTTTCCCAAAT 47968 Query 16541 GATGATGCAGCCAAGCCAGGATGACTTGCGCACCTGGCTGGAAACGAAATTCAACCCTCT 16600 |||||||||||| ||||||| || ||| || ||||| || || ||||||||||| || Sbjct 47967 GATGATGCAGCCCAGCCAGGGCGATTTGACGACGTGGCTCGAGACCAAATTCAACCCGCT 47908 Query 16601 GGCGGAAGAATGCGCGCCGGTAAACAACGCCATTGCCAAACCGCGTGGCCGCGACGGGGT 16660 || || ||| || | | | | ||||||| || || | || | || || Sbjct 47907 GGTCGAGGAAAACGATGGCTTGGCCGAAGTGCTTGCCAAGCCCCGGGCGCGGCATGGCGT 47848 Query 16661 GAACAACCAGAAAATGAAATCATACCCTGGCGGGTTCTTGATGTTCGCCTGGTCCGGTTC 16720 ||||| ||| |||||| ||||| ||||||||| |||||||| |||||| || || Sbjct 47847 CAACAATCAGCGAATGAAGAGCTACCCCGGCGGGTTCATGATGTTCAGCTGGTCTGGATC 47788 Query 16721 GCCAAAGACCATGCGCGGGCGTTCAGCGCCGCTGATTGTATGTGACGAGGTAGACGGATA 16780 ||| || |||||||| || | |||||||| | || || ||||| ||| ||||| || Sbjct 47787 GCCCAAAACCATGCGGGGCAGGTCAGCGCCATTTATCGTCTGTGATGAGACGGACGGCTA 47728 Query 16781 TGAACGAACCAGCGAAGGGCACCCGGTTGGCCTGCTGTGGCAGCGTTCTGCCACCTTCGG 16840 ||| || |||| || || |||||||| |||||| |||||||||| | || ||||| || Sbjct 47727 TGACCGGACCAATGAGGGCCACCCGGTCGGCCTGTTGTGGCAGCGGGCCGCGACCTTTGG 47668 Query 16841 TGACCAGCGGTTTTTGCTGGAAATCAGCACCCCTACCCTTAAAGGTGAATCGTACATCGA 16900 || |||||| ||||||||||||||||||| || || | || || | | ||||| Sbjct 47667 CGATCAGCGGCTTTTGCTGGAAATCAGCACGCCGACGATCAAGGGCGGCAGCTGGATCGA 47608 Query 16901 AAAAGCGTATGAAATGGGCGACCAGCGGCACTTCTTTGTTTGCTGCCCGCACTGTGACGA 16960 ||| || | ||| ||||||||||||| | |||| ||| | |||||||| || | | | Sbjct 47607 AAAGGCCTTTGATCAGGGCGACCAGCGGTATTTCTATGTGCGGTGCCCGCATTGCGGCCA 47548 Query 16961 TCACGTTACGCTTGAATGGGAAAACGTCAAATGGGATGGCCAGCGGGAAACTGACGCGGA 17020 | | || || ||| | || | || | ||| || || || Sbjct 47547 CCTGCAAAAACTGGACTGGTCGCAGGTGACTTG----GTCCA-----AAGATGCCG---- 47501 Query 17021 AACGCTGGCGGCCATCGAAGAACAGAAGCCGGAAACAGCGCACCTGTATTGCCCATCGTG 17080 ||| | | | | ||| ||| | | | | | | | || || || | | || Sbjct 47500 -ACGGT-GTGCACCTCGCCGAA-ACATCCGGCTATCTGTGCGCCGGTGACGGC-----TG 47449 Query 17081 CGGCGCGCAGTGGAATGACGGCGAACGGATAGCGGCTATCCGTCAGGCCGAAGAAAAGGG 17140 |||| | ||||| |||||||| || ||||| ||||| | || || |||| Sbjct 47448 CGGCACTGTGTGGAGCGACGGCGAGCGCTGCGCGGCGATCCGCAATGCAGAGCGCGAGGG 47389 Query 17141 CGCAGGCTGGAAGGCGTCCAGGCCGTTTGAAGGGCACGCAAGCTACCACCTGAACGAACT 17200 || ||||||| ||| | | ||||||| ||| || || ||| || ||| || || Sbjct 47388 CGGTGGCTGGATTGCGACGAAGCCGTTTCGAGGTCATGCGTCCTATCATCTGTCTGAGCT 47329 Query 17201 ATACAGCACATTCCGCAAAGTACCGGCCATCGTGCGTGACTACCTGGACAA----GCTGA 17256 || | || || | || || |||| || ||| ||||| |||| Sbjct 47328 GTATTCCTGCTTTCGGCGGCTCGAGGATATTGTGCAATCCTTCCTCGACAAAAGGGCTG- 47270 Query 17257 AAACGGACGACCTGCAAACCTTCACCAACGTCAGCCTGGCGCGCACCTGGGAAGAAGAAG 17316 ||| |||||||||||||| ||||| |||||| | || ||||||||||| | Sbjct 47269 ---CGGGAGACCTGCAAACCTTTGTGAACGTGTCCCTGGCCCAGACATGGGAAGAAGAGG 47213 Query 17317 GCGACAAGGTTGACCCGGATTCACTGATGGCAC--GCCGCGAGGAATACGCCGCGCAGGT 17374 |||||||| | || || ||||||| | ||| ||| ||| ||| |||| ||| Sbjct 47212 GCGACAAGCTCGAGGCGTCGGTCTTGATGGCGCGTGCCACGA--AATTCGCGGCGCCGGT 47155 Query 17375 GCCTGCTGGTGGGCTGTATA-TCACCGCAGGCATAGACATGCAGGTTGACCGCCTGGAAT 17433 ||| | ||| || | || |||| || || || ||||||||| |||||| || || Sbjct 47154 GCC-GATGGGGGCAGGCGTACTCACTGCCGGGATCGACATGCAGAATGACCGGCTCGAGG 47096 Query 17434 GTGAGGTGGTGGCCTGGGGCGTTGGTGAAGAATCCTGGTCATTGGGTTACCACGTCCTGT 17493 || | || |||||||| | || || ||||||||||| | | |||| | || | Sbjct 47095 TGGAAATCGTTGCCTGGGGGCTGGGAGAGGAATCCTGGTCTGTCGATTACAAGACGCTCT 47036 Query 17494 GGGGCGACCCTCTGACGCCAGATCCGTGGGATGCGCTTGATGACCTGCTGGCGGAAACCT 17553 ||||||| |||||| | ||| ||||| | || || | |||||| | || || | Sbjct 47035 GGGGCGATCCTCTGCAACAGGATGTATGGGACGAACTGGACGCTCTGCTGTCTGAGACAT 46976 Query 17554 ACCAGCACGAAACCGGCGCAGTGCTGCCGATCATGGCCGCCTGCCTGGATACCGGCGGCA 17613 || ||||| | ||| || | | ||| |||| || || ||||| ||||||||||| Sbjct 46975 GGCAACACGAGAGCGGTGCCGAGTTGCGGATCTCTGCGGCGTGCCTCGATACCGGCGGTG 46916 Query 17614 CCAGCGGTTACACGCAGGCCGCCTATGACTACGCCAGAGGGCGCACAGGCCGCCGCCTGT 17673 |||| ||| ||||| |||||||||||||| | ||| || ||| | | Sbjct 46915 AGGGCGGGCGCACCCAGGCGGCCTATGACTACGCGCGCAAGCGGCTGGGACGCAAAGTCT 46856 Query 17674 TTGCCATCAAAGGAGTGGGCGGTTGGGGTCGTCCTATCGTG 17714 || ||||| || || ||||| ||||| |||||||||||| Sbjct 46855 GGGCGATCAAGGGTGTTGGCGGCTGGGGCCGTCCTATCGTG 46815 Score = 134 bits (148), Expect = 4e-27 Identities = 497/772 (64%), Gaps = 40/772 (5%) Strand=Plus/Minus Query 19241 GACGGTGAATTCTTCGTGCGCCTGGTGTTTGGGGCTGACGCAGGGCCGTGGGGCTTCTCG 19300 ||||| || || | |||||| |||| | ||||||||| ||||| || |||||||| || Sbjct 45330 GACGGCGAGTTTATGGTGCGCATGGTCTATGGGGCTGATGCAGGCCCATGGGGCTTTGCG 45271 Query 19301 CTGCAACTGCTGGACCCGCAACGCTGTCCTGTGGACATGGTTGAAGATCGACTGCCAAAC 19360 |||| | || |||||| | || || ||||| | | || || || | || Sbjct 45270 TTGCAGGTCCTCGACCCGGTTCTGTGCCCGGTGGATTTTGACGAGGACCGGCGCCCCGGT 45211 Query 19361 GGAAATTTCATCCGCCAGGGAATCGAGTTTAACCGATACGGGCGG-CCTATCGCGTATTA 19419 || ||||||||| || ||||| | || || | | |||| | || | || ||||| Sbjct 45210 GGCGGTTTCATCCGTGCCGGCATCGAATATA-CCAAAATGGGCCGACCGGTGGCCTATTA 45152 Query 19420 TTTCAGCACAGTTGATGAATCGGATGAAAACTACCGTTGGGCTGGGCGTGACTTCGTGCG 19479 |||| || | ||| | | | | |||| | | | || || | || |||| Sbjct 45151 CTTCACGACGTTGGATCAGGCACAGGCGGACTATCACTATTCCGGTCGGGCGTTTCTGCG 45092 Query 19480 CGTGCCTGCGGATGAAATCCTGCACGGTTTCTTTGATGACATGGTGGGCCAGAAACGCGG 19539 |||||| || ||||||||| | ||| | || || || | || ||||||||||| || Sbjct 45091 CGTGCCCGCCGATGAAATCATTCACTGGTTTGAAGAGGATTTTGTAGGCCAGAAACGTGG 45032 Query 19540 CCTGCCCTGGATGGCCACCAGCCTGTTTCGTATGCGCCACCTGGGCGGCATGGAAGAAGC 19599 | ||||||||||||| || || | || ||||| || ||||||| | || || Sbjct 45031 CTTGCCCTGGATGGCGACGGCGTTGCTGCGGATGCGTCAGCTGGGCGAGTTTGAGAAAAG 44972 Query 19600 CGCACTGGTCAACGCGCGAGCAGGTGCCAACAAAATGGGGTTCATCGAATGGGATGAAAA 19659 ||| ||| ||| || || | ||| || ||||| | || | ||||| ||||| | | Sbjct 44971 CGCTCTGAACAATGCCCGTGAAGGCGCGAACAAGGTTGGCGTGATCGAGTGGGACG---A 44915 Query 19660 CGGCGCTGGACCTGAATTCGACGATGAAG---------ACGAA---------CTGATC-- 19699 ||| || || || |||| || |||| ||||| || || Sbjct 44914 GGGCATGGGCCCGGACATCGATGACGAAGAAATTCAGAACGAAGACGGCAGTCTTGTCGA 44855 Query 19700 -ATT------GACAGTGAACCGGGTGAATTCCAGGTGCTGCCACAGGGCGCACGCATCAA 19752 ||| || || ||| || | | ||| | ||||| |||||| ||| | || Sbjct 44854 TATTGAGCTGGAGAGCGAAAGCGGCGTTTACCACCAGTTGCCAGCGGGCGCCCGCCTGAA 44795 Query 19753 A-GACTGGTCACCGCAATACCCCAACGGCGAATTTGCCGTGTTCACCAAACAGATGCTGC 19811 | | ||| |||| || || ||||||||| | |||||| ||||||| ||||||| Sbjct 44794 ACGGGTGGAAACCG-GCTATCCGAACGGCGAAATGCAAGTGTTCTCCAAACACATGCTGC 44736 Query 19812 GCGGCATGGCTTCTGGCATGGGCGTGGCTTACAACAACCTGGCCAACGACCTGGAAGGCG 19871 |||| | || | || ||||||| || |||||| | || ||||||||||| || || | Sbjct 44735 GCGGTGTCGCGACCGGTCTGGGCGTTGCCTACAACGATCTCGCCAACGACCTCGAGGGGG 44676 Query 19872 TCAA--TTTC-AGTTCCATCCGACAGGGCACGCTTGACGAGCGCGAAAGCTGGAAGGAAT 19928 | || | || || |||||| || || || ||||||||| |||| ||| Sbjct 44675 TGAACCTGTCGAG---CATCCGGCATGGGGTCCTGAGCGAGCGCGATCAATGGATGGAGC 44619 Query 19929 TGCAGGAATGGCTAATCGAAAACCTGCACCAGCCTGTTTTTGACGCCTGGCT 19980 |||| || | || ||||| | | || |||||| | ||| |||||| Sbjct 44618 TGCAAGAGAGCCTGATCGAGGCCTTTGCCCTGCCTGTCTATGAGCGCTGGCT 44567 Score = 127 bits (140), Expect = 6e-25 Identities = 283/425 (67%), Gaps = 6/425 (1%) Strand=Plus/Minus Query 31504 CTGATTTTTTACATGGCGTGGAGGTGCTGGAAATTGATTCCGGTTCACGCGTCATTCAAA 31563 ||| |||| | || ||||| || ||||| || || || || ||| | ||| || | | Sbjct 34492 CTGGTTTTCTCCACGGCGTCGAAGTGCTTGAGATCGACTCGGGTCCGCGCCCGATCCGCA 34433 Query 31564 CCGTTAAATCAAGCGTCATCGGTATTGTTGGCACCGCGCCAAATGCTGACCCTGACGCAT 31623 || | | | ||||||| || ||||| ||||||||||| | || ||| | || || | Sbjct 34432 CCATCAGCACCGGCGTCATTGGCATTGTAGGCACCGCGCCGAGCGCGGACGCCGATGCCT 34373 Query 31624 TCCCGCTAAACACCCCAACCCTGATTGCAGGCAGCCAGCGCGAAGCGGCCAAACTGGACA 31683 | || | |||| || ||||| || || |||| ||||| ||||| ||||||| Sbjct 34372 TTCCTTTCGACACTCCGGTTCTGATCGCCGGGAGCCGTCGCGAGGCGGCACGTCTGGACA 34313 Query 31684 TGCTTG------GCACCGGTGAAGGCACCCTTCCCAAAGCACTGGATGCCATCCTGGACC 31737 | | ||||||| | ||||| | || || || |||| |||| |||| | Sbjct 34312 CGACCGAGGACGGCACCGGGGGCGGCACGTTGCCTGGCGCGCTCGATGGCATCATGGATC 34253 Query 31738 AGATCGGCGCTGTGGTCATCGTTGTGCGTGTTGAAGAAGGCGAAAACGAAGCCGCAACGC 31797 || |||||||| || ||| ||| || || ||||| || | |||| | || ||| | Sbjct 34252 AGGCGGGCGCTGTCGTGATCTGTGTCCGCGTCGAAGAGGGGGCGGACGAGGGCGAAACCC 34193 Query 31798 TGGCCAACATCATGGGTGGAGTTAACGCATCAACCGGCAAATATGAAGGCGTTCACGCAC 31857 | || || ||||| || || || || || ||||| | || ||||||||||| | Sbjct 34192 TTGCAAATATCATTGGCGGTGTGAATGCGAATACCGGGCAGCTCGAGGGCGTTCACGCGC 34133 Query 31858 TGCTTGGCGCTGAATCCGTTGTGGGCTACTCGCCGCGCATTCTGTGCGTTCCCGGCTTCA 31917 || | || || ||| || || || | |||||||||| || |||| || || | | Sbjct 34132 TGGTCGGTGCCGAAAGTGTCGTCGGACATGCGCCGCGCATCCTCTGCGCGCCGGGTTGGA 34073 Query 31918 CGCAT 31922 ||||| Sbjct 34072 CGCAT 34068 >seq19 Length=1029424 Score = 127 bits (140), Expect = 6e-25 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 203 AGCATCAACAACCGGCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCA 262 |||||| || | |||| || || ||||||| | || || |||||| ||| || Sbjct 986604 AGCATCTGCATCTGGCCGTTGATATCCACCACAACCTCGGTGGTGTAGACATCCTGACCT 986663 Query 263 GCCTGGTCCTGCCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTG 322 ||| || |||||| |||||||| |||||| ||| |||||| | ||||| ||| ||| Sbjct 986664 TCCTTGTTCTGCCATTTGCGCGTCTGCAGCTTGCCCTCAATGTAGACCTTCGAGCCCTTG 986723 Query 323 CGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCC 382 ||||| ||||||| ||| | ||| || | ||| ||||| ||||| || ||||||||||| Sbjct 986724 CGCAGATACTGGCCGGCCACTTCGGCGATCTTGCCGAACATGACAACCCGGTGCCATTCG 986783 Query 383 GTTTT 387 ||||| Sbjct 986784 GTTTT 986788 >seq5 Length=3486096 Score = 111 bits (122), Expect = 4e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 233 ACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTGCAGC 292 || || || || ||||| ||||| |||| |||| | ||||| ||||||||| || | Sbjct 756548 ACAATCTCTGTGGTGTAACGATCCTGGCCATCCTGACCTTGCCATTTGCGCGTTCTCAAC 756489 Query 293 GCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGC 352 || || || || | |||||||| ||||| |||||| | || |||||| || ||||| Sbjct 756488 GCACCCTCTATATAGACCTTGCTACCTTTTTTCAGGTATTCGCCGGCGATCTCAGCCAGA 756429 Query 353 TTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTA 412 ||||| || || ||||||||||| || || | || || || |||||||| Sbjct 756428 CGATTGAAGAACACAACACGGTGCCATTCAGTACGCTCCTGCTGCTGGCCGGTCTGCTTG 756369 Query 413 TCCTTCCAGGTTTCAGACGTGGCAAT 438 || ||||| ||||| || || ||||| Sbjct 756368 TCTTTCCATGTTTCGGAGGTAGCAAT 756343 >seq413 Length=79672 Score = 82.4 bits (90), Expect = 2e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 229 CACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCGCGTTTG 288 ||| |||| ||| || ||||||||||| || || || |||||||||||||| |||| Sbjct 31430 CACGACGACTTCTGTGGTGTAGCGATCCTGCCCTGCTTGATCCTGCCACTTGCGGGTTTC 31489 Query 289 CAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTG 333 ||| |||||||||| | ||||| ||| || ||||| ||||| Sbjct 31490 GAGCTGGCCTTCAATGTAAACCTTCGAGCCCTTACGCAGATACTG 31534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135400423021592