Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq1 84.2 6e-12 seq2 80.6 8e-11 >seq1 Length=7344524 Score = 84.2 bits (92), Expect = 6e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 8567 CAGCGGGTATGGTGGAATTGGTAGACACGCTTGGTTTAGGTCCAAGTGCCTGAAAAGCTT 8626 |||||||| ||||| |||||||||||||||| | ||||| | |||| || | || | Sbjct 5829322 CAGCGGGTGTGGTGAAATTGGTAGACACGCTAGACTTAGGATCTAGTG-CTTCACGGCGT 5829380 Query 8627 GGGGGTTCGAGTCCCTCTACCCGCAC 8652 ||||||||||||||||| |||||||| Sbjct 5829381 GGGGGTTCGAGTCCCTCCACCCGCAC 5829406 >seq2 Length=6328565 Score = 80.6 bits (88), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 8569 GCGGGTATGGTGGAATTGGTAGACACGCTTGGTTTAGGTCCAAGTGCCTGAAAAGCTTGG 8628 |||| | ||||| ||||||||||||||| | ||||||| | ||||| | || || ||| Sbjct 3326229 GCGGATGTGGTGAAATTGGTAGACACGCCAGATTTAGGTTCTGGTGCC-GCAAGGCGTGG 3326171 Query 8629 GGGTTCGAGTCCCTCTACCCGCACCAGCT 8657 |||||| |||||||| | |||||||| || Sbjct 3326170 GGGTTCAAGTCCCTCCATCCGCACCATCT 3326142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146174729365120