Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025434.1 Length=62699 Score E Sequences producing significant alignments: (Bits) Value seq493 282 2e-71 >seq493 Length=52014 Score = 282 bits (312), Expect = 2e-71 Identities = 180/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 60130 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 60189 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 48058 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 48117 Query 60190 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTAAGCG 60249 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| || |||| Sbjct 48118 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 48177 Query 60250 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 60309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 48178 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 48237 Query 60310 CCAGCAGTGCCAGCAC 60325 |||||||| ||||||| Sbjct 48238 CCAGCAGTTCCAGCAC 48253 Score = 282 bits (312), Expect = 2e-71 Identities = 180/196 (92%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 60130 TTTCCAGTTCTGCTATGCGCTTACTTCCATCCGCGATTACTCCCTCGTAATATTCACGCT 60189 ||||||||| || || |||||||| ||||||| ||| || || |||||||| ||||||| Sbjct 50838 TTTCCAGTTTAGCAATACGCTTACTCCCATCCGAGATAACACCTTCGTAATACTCACGCT 50897 Query 60190 GCTCGTTGAGTTTTGATTTTGCTGCTTCAAGCTCAACGCGCAGCTTCCCTACCGTAAGCG 60249 |||||||||||||||||||||||| |||||||||||| ||||| |||||||| || |||| Sbjct 50898 GCTCGTTGAGTTTTGATTTTGCTGTTTCAAGCTCAACACGCAGTTTCCCTACTGTTAGCG 50957 Query 60250 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 60309 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 50958 CAATATCCTCGTTCTCCTGGTCGCGGCGTTTGATGTATTGCTGGTTTCTTTCCCGTTCAT 51017 Query 60310 CCAGCAGTGCCAGCAC 60325 |||||||| ||||||| Sbjct 51018 CCAGCAGTTCCAGCAC 51033 Score = 149 bits (164), Expect = 3e-31 Identities = 177/237 (75%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 60834 GCTCACTTCACACCTCTCTGTTTGTTGATAAGTTCAATATCCTGCTGGCAACTGGCGCAA 60893 ||||||||| |||||||||||| |||||||||| | ||||| ||||||||| || ||| Sbjct 51136 GCTCACTTCGAACCTCTCTGTTTACTGATAAGTTCCAGATCCTCCTGGCAACTTGCACAA 51195 Query 60894 GTTCGGCATCCGCGAACAGCCTGGCGTCGCCGCTCATCTATCGGATCGCCACACTCGCAA 60953 || || || || |||| || |||||| || ||||||||||||||||||||||| ||| Sbjct 51196 GTCCGACAACCCTGAACGACCAGGCGTCTTCGTTCATCTATCGGATCGCCACACTCACAA 51255 Query 60954 CAATGAGTAGCAGATGGGGCAT--TACTTTCGGATTTGTATTT---TTGCAGGGAGAGAT 61008 |||||||| |||||| || | | || || | |||| |||| | | | Sbjct 51256 CAATGAGTGGCAGATATAGCCTGGTGGTTCAGGCGGCGCATTTTTATTGCTGTG-----T 51310 Query 61009 TGCGCTGCAATTCTTCGATTTCAGCGGCATTGTCGATGATATCTGCCAT-TTTCCTT 61064 ||||||| |||||||| ||||| | || || ||||| |||||||| |||| || Sbjct 51311 TGCGCTGTAATTCTTCTATTTCTGATGCTGAATCAATGATGTCTGCCATCTTTCATT 51367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200510211182320