Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq318 706 0.0 seq60 567 2e-157 >seq318 Length=132058 Score = 706 bits (782), Expect = 0.0 Identities = 737/960 (77%), Gaps = 8/960 (1%) Strand=Plus/Minus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||||||| || | || ||||| || || ||||| || ||| | | || || Sbjct 95111 AACCGTCTATACATCGGTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACTGCAACT 95052 Query 19592 ATCTGCTT-CATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || |||||| || || || || ||||| ||||| ||||| ||||| ||||| || Sbjct 95051 -TCTGTTTTCATTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATCCGTGA 94993 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG 19710 || ||||| ||| |||||||| |||||||||||||| || || || || || || | Sbjct 94992 GCCTGTATCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTACCAAC 94933 Query 19711 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATG 19770 || || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 94932 TTCTAACGCGATCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGATGAATG 94873 Query 19771 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGC 19830 ||| |||||||| || || | |||||| | || | ||||||| || |||| |||| | Sbjct 94872 GCTTTACAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATCTGCTC 94813 Query 19831 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGT 19890 |||||||| || || ||||||||| | || |||| ||| | |||||||| ||| Sbjct 94812 ATACATGGGTCGTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGT 94753 Query 19891 TGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCA 19950 || |||||||| || |||||||| || |||| || || || ||||||| | ||||| Sbjct 94752 AGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATCGGTCA 94693 Query 19951 GGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGT 20010 ||| ||||| |||| ||||||| | |||||||| ||||| ||||||| |||| | || Sbjct 94692 AGGTTCTTTCTCAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATGATCGT 94633 Query 20011 ATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGT 20070 ||||||||| || || ||||| || |||||||| ||||||||||| ||||| |||||||| Sbjct 94632 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCTGGTGT 94573 Query 20071 ATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCG 20130 |||||||| ||| | ||| ||| ||||||||||| || ||||| || || || | || Sbjct 94572 TTTCGGTGGTTCATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTAATCCG 94513 Query 20131 TGAGACTACTGAACAGGAAAGTCAG--AACTATGGTTACAAGTTTGGGCAAGAAGAAGAG 20188 ||| |||||||| | ||| |||| ||| |||||||||||| || || |||||||| Sbjct 94512 TGAAACTACTGAGAACGAA--TCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAAGAA 94455 Query 20189 ACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCT 20248 || || ||||| ||||| ||||| ||||||||||| ||| | |||||||||||||||||| Sbjct 94454 ACTTACAACATTGTAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCT 94395 Query 20249 TTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGG 20308 |||||||| |||||||| ||||||||||| ||||| ||||| || | || |||||| Sbjct 94394 TTCAACAACTCTCGTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGG 94335 Query 20309 TTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAG 20368 || |||| | || ||||||| ||||| || || || ||||| |||||||| ||||| Sbjct 94334 TTTACTGCTCTTGGTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTCAACCAA 94275 Query 20369 TCCCTTCTCGA-CAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 || | | || |||| || ||||| || | ||||||| ||| ||| |||| ||||| Sbjct 94274 TCAGTAGTTGATTCACAA-GGACGTGTTATCAACACTTGGGGTGATATTATCAACCGTGC 94216 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 ||| || || | || || ||||| || || || ||||| |||||||||||||||||||| Sbjct 94215 TAACCTTGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTGC 94156 >seq60 Length=599436 Score = 567 bits (628), Expect = 2e-157 Identities = 654/878 (74%), Gaps = 2/878 (0%) Strand=Plus/Minus Query 19600 CATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTATC 19659 ||| || || || || || ||||| || || || |||||||| ||||| || || ||| | Sbjct 100501 CATCATCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGCCTGTAGC 100442 Query 19660 CGGTAGCCTTCTT-TATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATG 19718 || | | || || || || ||||||||||| || || || | || || || | Sbjct 100441 TGG-ATCTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTTCAAACG 100383 Query 19719 CCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACA 19778 | ||||| | |||||||||||||||||||||||| |||| |||| || ||| | |||| Sbjct 100382 CAATCGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGTTATACA 100323 Query 19779 ACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGG 19838 |||| || || | |||| | | || ||||| ||| | ||||| | | || |||| Sbjct 100322 ACGGTGGTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGG 100263 Query 19839 GACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACT 19898 | || || |||||||||||||| || |||| ||| | |||||||||| || || | || Sbjct 100262 GTCGTGAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTCT 100203 Query 19899 CTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCGTCTACCCGTTTGGTCAGGGTAGCT 19958 ||||||| || ||||| || ||||| || || | || ||||| | ||||| ||||| | Sbjct 100202 CTGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGTT 100143 Query 19959 TCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCCAAG 20018 |||| |||| |||||| || ||||| || |||||||| |||| |||| | || ||||||| Sbjct 100142 TCTCTGATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTTTCCAAG 100083 Query 20019 CCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTCGGTG 20078 | |||||||||||| | |||||||| ||||| ||| |||||| |||||||| ||||||| Sbjct 100082 CTGAACATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTG 100023 Query 20079 GGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAGACTA 20138 | ||| |||||||||| |||||||| || | || || || | | ||||| || | Sbjct 100022 GTTCATTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAA 99963 Query 20139 CTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACA 20198 ||| ||| | ||||| |||||||| || || ||||||||||| || || |||| Sbjct 99962 GCGAAGTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACA 99903 Query 20199 TCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATA 20258 ||||||| ||||||||||||||||| ||||| || |||||||| ||| ||||||||| Sbjct 99902 TCGTAGCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGCTAGTTTCAACAACT 99843 Query 20259 GCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCT 20318 | || |||| ||||||||||| || ||||| || || ||||||||||| | || | Sbjct 99842 CTAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAACAGCTT 99783 Query 20319 TGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCG 20378 | || || ||| ||||| || || | |||||||| ||||| ||||| || || | | Sbjct 99782 TAGGTGTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTG 99723 Query 20379 ACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGT 20438 | | | |||||||| || | || ||||||||||| | || ||||| || | || Sbjct 99722 ATAGTGAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATTTAGGTA 99663 Query 20439 TTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 | || || ||||| ||||| || ||||||||||||||| Sbjct 99662 TGGAAGTAATGCACGAACGTAACGCTCATAACTTCCCA 99625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148827506305656