Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq318 654 0.0 seq60 551 2e-152 >seq318 Length=132058 Score = 654 bits (724), Expect = 0.0 Identities = 723/958 (75%), Gaps = 4/958 (0%) Strand=Plus/Minus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||||||| || | || ||||| || || ||||| || ||| | | || || Sbjct 95111 AACCGTCTATACATCGGTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACTGCAACT 95052 Query 28720 ATCTGCTT-CATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || |||||| || || || || || || ||||| ||||| ||||| ||||| || Sbjct 95051 -TCTGTTTTCATTATCGCTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATCCGTGA 94993 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG 28838 ||||| |||| |||||| || |||||||||||||| || || || || ||||| | Sbjct 94992 GCCTGTATCTGGTTCTCTTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTACCAAC 94933 Query 28839 CAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATG 28898 || || ||||| ||||||||||||||||||||||||||| ||| ||||||||||| Sbjct 94932 TTCTAACGCGATCGGTCTACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGATGAATG 94873 Query 28899 GCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGC 28958 ||| |||||||| || || | |||||| | || | ||||||| || |||| ||| | Sbjct 94872 GCTTTACAACGGTGGTCCTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATCTGCTC 94813 Query 28959 TTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGT 29018 |||||||| || || ||||||||| | || |||| ||| | || ||||| ||| Sbjct 94812 ATACATGGGTCGTGAATGGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGT 94753 Query 29019 CGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCA 29078 || ||||| || || || ||||| || |||| || ||| || |||||||| ||||||| Sbjct 94752 AGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATCGGTCA 94693 Query 29079 AGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGT 29138 ||||||||| || | |||||| | ||||| || || || ||||||| |||| | || Sbjct 94692 AGGTTCTTTCTCAGATGGTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATGATCGT 94633 Query 29139 GTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 |||||||| || || ||||| || |||||||| ||||||||||| || |||||||| || Sbjct 94632 ATTCCAAGCTGAGCACAACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCTGGTGT 94573 Query 29199 GTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCG 29258 |||||||| || | || ||| ||||||||||| || || || || || || | || Sbjct 94572 TTTCGGTGGTTCATTGTTCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTAATCCG 94513 Query 29259 TGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGAC 29318 ||| || ||||| || || ||| |||||||||||| || || |||||||| || Sbjct 94512 TGAAACTACTGAGAACGAATCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAAGAAAC 94453 Query 29319 TTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTT 29378 ||| ||||| ||||| ||||||||||||||||| ||| | ||||||||||| |||||||| Sbjct 94452 TTACAACATTGTAGCTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTT 94393 Query 29379 CAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTT 29438 ||| || |||||||| ||||||||||| ||||| ||||| || | || |||||||| Sbjct 94392 CAACAACTCTCGTTCTCTTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTT 94333 Query 29439 CGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 |||| | || ||||||| ||||| || || || ||||| || ||||| ||||| || Sbjct 94332 TACTGCTCTTGGTATTTCTACTATGGCATTCAACCTAAACGGATTCAACTTCAACCAATC 94273 Query 29499 GCTTCTCGA-CAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTA 29557 | | || |||| || ||||| || || ||||||| |||| || |||| || |||| Sbjct 94272 AGTAGTTGATTCACAA-GGACGTGTTATCAACACTTGGGGTGATATTATCAACCGTGCTA 94214 Query 29558 ACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGC 29615 |||| || | ||||| ||||| |||||||| ||||| |||||||||||||| || || Sbjct 94213 ACCTTGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCACTTGACCTTGC 94156 >seq60 Length=599436 Score = 551 bits (610), Expect = 2e-152 Identities = 652/883 (74%), Gaps = 0/883 (0%) Strand=Plus/Minus Query 28728 CATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTCGC 28787 ||| || || || || || || || || || || |||||||| ||||| || ||||| || Sbjct 100501 CATCATCGCTTTTATCGCAGCTCCGCCTGTAGATATTGATGGTATCCGTGAGCCTGTAGC 100442 Query 28788 TGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAATGC 28847 |||| | | | || || ||||||||||| || || || |||| || || || Sbjct 100441 TGGATCTTTATTATACGGTAACAACATCATCAGTGGTGCTGTTATACCTAGTTCAAACGC 100382 Query 28848 CATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAA 28907 ||||| | |||||||||||||||||||||||| |||| |||| || ||| | ||||| Sbjct 100381 AATCGGTATTCACTTCTACCCAATTTGGGAAGCTGCTTCAATTGAAGAGTGGTTATACAA 100322 Query 28908 CGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGG 28967 ||| || || | |||| | | || ||||| ||| | ||||| || | || ||||| Sbjct 100321 CGGTGGTCCTTACCAATTAATCGTATTCCATTTCTTAATTGGTGTTGCTTGTTGGATGGG 100262 Query 28968 ACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTC 29027 || || |||||||||||||| || |||| ||| | || ||||||| || |||| ||| Sbjct 100261 TCGTGAATGGGAACTTAGCTACCGTTTAGGTATGCGTCCTTGGATTTTCGTAGCATTCTC 100202 Query 29028 AGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTT 29087 ||||| || ||||| |||||||| || ||| | || ||||| ||||||||||| ||| Sbjct 100201 TGCTCCAGTAGCAGCAGCATCTGCAGTATTCTTAGTTTACCCTATCGGTCAAGGTAGTTT 100142 Query 29088 TAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAAGC 29147 || | ||||| || |||||||| || || || |||| |||| | || |||||||| Sbjct 100141 CTCTGATGGTATGCCATTAGGTATTTCTGGTACGTTTAACTTCATGATCGTTTTCCAAGC 100082 Query 29148 CGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCGGTGG 29207 |||||||||||| | |||||||| ||||| ||| || |||||||| || |||||||| Sbjct 100081 TGAACATAACATTTTAATGCACCCATTCCATATGGCTGGTGTTGCTGGTGTTTTCGGTGG 100022 Query 29208 CTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTGTGCGTGAGACGAC 29267 || |||| ||||| |||||||| || | || || || | | ||||| || | Sbjct 100021 TTCATTATTCAGTGCTATGCACGGATCTTTAGTAACTTCAAGTTTAATTCGTGAAACAAG 99962 Query 29268 TGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACAT 29327 |||| ||| ||||| |||||||| || |||||||||||||| ||||| ||||| Sbjct 99961 CGAAGTTGAATCTGTTAACTACGGTTACAAATTCGGACAAGAAGAAGAAACTTACAACAT 99902 Query 29328 CGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAG 29387 |||||| ||||| ||||||||||| ||||| || |||||||||||| |||||| || Sbjct 99901 CGTAGCTGCTCATGGTTACTTTGGTCGTTTAATTTTCCAATATGCTAGTTTCAACAACTC 99842 Query 29388 CCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTT 29447 | || |||| ||||||||||| || ||||| || || ||||||||||| | || || Sbjct 99841 TAGAGCTTTACATTTCTTCCTTGCAGCATGGCCTGTAGTTGGGATTTGGTTAACAGCTTT 99782 Query 29448 GGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGA 29507 || || ||| ||||| || || | |||||||||||||| ||||| || || | || Sbjct 99781 AGGTGTAAGTACTATGGCATTCAACTTAAACGGTTTTAACTTCAACCAATCTGTTGTTGA 99722 Query 29508 CAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTT 29567 | | |||||||| || || || |||||||| | | || || || | | || | Sbjct 99721 TAGTGAAGGTCGTGTTATAAACACATGGGCTGACATCATTAACCGTGCAGATTTAGGTAT 99662 Query 29568 TGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGAT 29610 ||||||||||| || ||||| ||||||||||||||| | ||| Sbjct 99661 GGAAGTAATGCACGAACGTAACGCTCATAACTTCCCATTAGAT 99619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146664325109272