Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq318 681 0.0 seq60 574 1e-159 >seq318 Length=132058 Score = 681 bits (754), Expect = 0.0 Identities = 751/995 (75%), Gaps = 4/995 (0%) Strand=Plus/Minus Query 18708 TAACCCTTGGG-ACTCTTTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCG 18766 || || ||||| || ||| | |||| ||| | || || || || |||||||| || |||| Sbjct 95154 TAGCCTTTGGGCACGCTTCT-GTGAATGGATTACAAGCACTGAGAACCGTCTATACATCG 95096 Query 18767 GCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCTACTATTTGTTTCATTATTG 18826 | ||||| || || ||||| || ||| | | || ||| | ||||||||| | Sbjct 95095 GTTGGTTCGGTGTTCTTATGATCCCTACTCTATTAACTGCAACTTCTGTTTTCATTATCG 95036 Query 18827 CCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTC 18886 | || || ||||| ||||| || ||||| ||||| ||||| |||||||| | || || Sbjct 95035 CTTTTATCGCTGCTCCTCCAGTGGACATCGATGGTATCCGTGAGCCTGTATCTGGTTCTC 94976 Query 18887 TTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGAC 18946 ||||||| |||||||||||||| || || || || || || | || || ||||| | Sbjct 94975 TTCTTTACGGAAACAACATCATCTCTGGTGCTGTTGTACCAACTTCTAACGCGATCGGTC 94916 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 |||||||||||||||||||||||||| ||| |||||||||||||| |||||||| || | Sbjct 94915 TACACTTCTACCCAATTTGGGAAGCTGCTTCTCTTGATGAATGGCTTTACAACGGTGGTC 94856 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | |||||| | || | ||||||| || |||| ||| | |||||||| || || | Sbjct 94855 CTTACCAACTAATCGTTTGCCACTTCTTCCTTGGAATCTGCTCATACATGGGTCGTGAAT 94796 Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTG 19126 |||||||| | || |||| ||||| |||||||| ||| || ||||| || || | Sbjct 94795 GGGAACTTTCTTTCCGTTTAGGTATGCGTCCTTGGATCGCTGTAGCTTACTCTGCACCAG 94736 Query 19127 TTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACG 19186 |||| || || |||| || ||| | |||| ||| | ||||||||||| || || | Sbjct 94735 TTGCAGCTGCTACTGCTGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCAGATG 94676 Query 19187 CTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATA 19246 ||||||| | ||||| |||||| ||||||| |||| | |||||||| ||||| || | Sbjct 94675 GTATGCCTCTTGGTATCTCTGGTACATTCAACTTCATGATCGTATTCCAAGCTGAGCACA 94616 Query 19247 ACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTAT 19306 ||||||| |||||||| ||||||||||| ||||| |||||||| ||||| || ||| | | Sbjct 94615 ACATCCTTATGCACCCATTCCACATGCTAGGTGTTGCTGGTGTTTTCGGTGGTTCATTGT 94556 Query 19307 TTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGG 19366 | ||| ||||||||||| || ||||| || || || | |||||||||||||| | | Sbjct 94555 TCTCTGCTATGCACGGTTCACTAGTTACTTCATCTCTAATCCGTGAAACTACTGAGAACG 94496 Query 19367 TATCTCAGAACTATGGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTG 19426 ||| ||| ||| |||||||| || || |||||||| ||||| |||||||| |||| Sbjct 94495 AATCAGCTAACGCTGGTTACAAGTTCGGTCAGGAAGAAGAAACTTACAACATTGTAGCTG 94436 Query 19427 CTCATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTC 19486 |||| || || |||||||| || || ||||| ||||| || |||||||| ||||||| Sbjct 94435 CTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACAACTCTCGTTCTC 94376 Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 | || ||||| | ||||||||||| || | || ||||||||| | || ||||| | Sbjct 94375 TTCACTTCTTCCTAGCTGCTTGGCCAGTTATCGGTATTTGGTTTACTGCTCTTGGTATTT 94316 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACA-ACAAT 19605 || |||||||||||| | || || || ||||| ||||| || | |||| |||| Sbjct 94315 CTACTATGGCATTCAACCTAAACGGATTCAACTTCAACCAATCAGTAGTTGATTCACAA- 94257 Query 19606 GGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTA 19665 || ||||| || | ||||||| ||| ||| |||| ||||||||||| || | || || Sbjct 94256 GGACGTGTTATCAACACTTGGGGTGATATTATCAACCGTGCTAACCTTGGTATGGAAGTT 94197 Query 19666 ATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 |||||||| ||||| ||||| |||||||||||||| Sbjct 94196 ATGCACGAGCGTAACGCTCACAACTTCCCACTTGA 94162 >seq60 Length=599436 Score = 574 bits (636), Expect = 1e-159 Identities = 714/976 (73%), Gaps = 4/976 (0%) Strand=Plus/Minus Query 18733 TGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCG 18792 ||| | || ||||| || || ||| | || || || |||||||| | ||||| || Sbjct 100587 TGGATTACTAGTACTGAAAATCGTTTATACATTGGTTGGTTTGGTTGTTTAATGATCCCT 100528 Query 18793 TGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCTGTAGAC 18852 | | |||| || ||||| ||| || || || || || || || |||||||| Sbjct 100527 ACGTTATTAACAGCAGCTTCTTGTTACATCATCGCTTTTATCGCAGCTCCGCCTGTAGAT 100468 Query 18853 ATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTAT--GGAAACAACATCATAT 18910 |||||||| ||||| |||||||| || || |||| |||| || ||||||||||| Sbjct 100467 ATTGATGGTATCCGTGAGCCTGTAGCTGGA--TCTTTATTATACGGTAACAACATCATCA 100410 Query 18911 CGGGAGCCGTCGTTCCGAGCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAG 18970 || || || | || || || || ||||| | |||||||||||||||||||||| Sbjct 100409 GTGGTGCTGTTATACCTAGTTCAAACGCAATCGGTATTCACTTCTACCCAATTTGGGAAG 100350 Query 18971 CTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACT 19030 || |||| |||| || ||| | |||||||| || || | |||| | | || ||||| | Sbjct 100349 CTGCTTCAATTGAAGAGTGGTTATACAACGGTGGTCCTTACCAATTAATCGTATTCCATT 100290 Query 19031 TCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGA 19090 || | ||||| || | || ||||| || || |||||||||||||| || |||| | Sbjct 100289 TCTTAATTGGTGTTGCTTGTTGGATGGGTCGTGAATGGGAACTTAGCTACCGTTTAGGTA 100230 Query 19091 TGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCC 19150 |||| |||||||||| || || | ||| ||||| || || ||||| ||||| || ||| Sbjct 100229 TGCGTCCTTGGATTTTCGTAGCATTCTCTGCTCCAGTAGCAGCAGCATCTGCAGTATTCT 100170 Query 19151 TTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTA 19210 | || || || | ||||||||| || || | |||||| || |||||| ||||| Sbjct 100169 TAGTTTACCCTATCGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTATTTCTGGTA 100110 Query 19211 CGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACA 19270 |||| |||| |||| | || ||||| |||||||||||||| | |||||||| ||||| | Sbjct 100109 CGTTTAACTTCATGATCGTTTTCCAAGCTGAACATAACATTTTAATGCACCCATTCCATA 100050 Query 19271 TGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTG 19330 || ||||| |||||||| ||||| || ||| |||| ||||| |||||||| || | | Sbjct 100049 TGGCTGGTGTTGCTGGTGTTTTCGGTGGTTCATTATTCAGTGCTATGCACGGATCTTTAG 99990 Query 19331 TTACGTCCTCGCTTGTGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGT 19390 | || || | | |||||||| | |||| | |||| ||||| || ||||| | Sbjct 99989 TAACTTCAAGTTTAATTCGTGAAACAAGCGAAGTTGAATCTGTTAACTACGGTTACAAAT 99930 Query 19391 TTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTA 19450 | || ||||||||||| ||||| ||||| || ||||||||||| || |||||||| | | Sbjct 99929 TCGGACAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGTCGTTTAA 99870 Query 19451 TTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGC 19510 ||||||| || || |||||||| | || |||||||||| | || || |||| Sbjct 99869 TTTTCCAATATGCTAGTTTCAACAACTCTAGAGCTTTACATTTCTTCCTTGCAGCATGGC 99810 Query 19511 CTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATG 19570 |||| ||||| |||||||| | || | || ||||| || |||||||||||||| || | Sbjct 99809 CTGTAGTTGGGATTTGGTTAACAGCTTTAGGTGTAAGTACTATGGCATTCAACTTAAACG 99750 Query 19571 GCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTG 19630 | |||||||| ||||| || || |||| | | |||||||| || | || ||||||| Sbjct 99749 GTTTTAACTTCAACCAATCTGTTGTTGATAGTGAAGGTCGTGTTATAAACACATGGGCTG 99690 Query 19631 ACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACT 19690 |||| | || ||||| | | || | || ||||||||||||||||| |||||||||| Sbjct 99689 ACATCATTAACCGTGCAGATTTAGGTATGGAAGTAATGCACGAACGTAACGCTCATAACT 99630 Query 19691 TCCCACTTGATTTGGC 19706 ||||| | ||||| || Sbjct 99629 TCCCATTAGATTTAGC 99614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141147573064056