Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_026014.1 Length=35814 Score E Sequences producing significant alignments: (Bits) Value seq493 410 3e-110 >seq493 Length=52014 Score = 410 bits (454), Expect = 3e-110 Identities = 385/489 (79%), Gaps = 1/489 (0%) Strand=Plus/Plus Query 23353 AAAAGGGATAGTCCAGCTCAGTAGTGCCACCAACAGCACGTCTGAAACACTGGCCGCGAC 23412 ||| |||||||| |||||||| ||||| |||||||||||||||||||| || || || || Sbjct 32325 AAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGTCTGAAACGCTTGCTGCAAC 32384 Query 23413 ATCGAAAGCGGTTAAGGCGGTAATGGATGAAACGAACAAGAAAGCGCCCTTAAACAGTCC 23472 | || |||||||||| |||||||||||||||||||| ||||| | || | |||||| Sbjct 32385 GCCAAAGGCGGTTAAGGTGGTAATGGATGAAACGAACAGAAAAGCCCACTGGA-CAGTCC 32443 Query 23473 TGCGTTGACCGGAACGCCAACAACGCCAACTGCGCGACAGGGAACGAATAATACCCAAAT 23532 || ||||||||||||||||| | ||||| |||| |||||| || |||||||| || Sbjct 32444 GGCACTGACCGGAACGCCAACAGCACCAACCGCGCTCAGGGGAACAAACAATACCCAGAT 32503 Query 23533 CGCAAGCACGGCTTTCGTTATGGCTGCGATTGCCGCCCTTGTAGATTCGTCACCTGACGC 23592 || | ||| ||||| || |||| |||||||| | || | || ||||||||||||| Sbjct 32504 TGCGAACACCGCTTTTGTACTGGCCGCGATTGCAGATGTTATCGACGCGTCACCTGACGC 32563 Query 23593 ACTGAATACGCTGAACGAGTTAGCGGCGGCGCTGGGAAACGACCCGAATTTTGCGACCAC 23652 ||||||||||||||| || | || || ||||| || || || || ||||||| ||||| Sbjct 32564 ACTGAATACGCTGAATGAACTGGCCGCAGCGCTCGGGAATGATCCAGATTTTGCTACCAC 32623 Query 23653 CATGACTAACGCGCTTGCGGGTAAGCAACCGAAAGATGCCACCCTGACGGCGCTGGCCGG 23712 |||||||||||||||||||||||| |||||||| |||| || |||||||||||||| || Sbjct 32624 CATGACTAACGCGCTTGCGGGTAAACAACCGAAGAATGCGACACTGACGGCGCTGGCAGG 32683 Query 23713 GCTTGCTACTGCGGCAGACAAGTTTCCGTATTTTACGGGGAATGATGTCGCCAGCCTGGC 23772 |||| | || ||| | | || || ||||||||| ||| ||||||| |||||||||| | Sbjct 32684 GCTTTCCACGGCGAAAAATAAATTACCGTATTTTGCGGAAAATGATGCCGCCAGCCTGAC 32743 Query 23773 AACCCTGACAAAAGTCGGGCGGGATATTCTTGCGAAATCGACCGTTGCTGCCGTTATCGA 23832 ||||| | || || |||||||||| || ||| ||||||| | ||| | || Sbjct 32744 TGAACTGACTCAGGTTGGCAGGGATATTCTGGCAAAAAATTCCGTTGCAGATGTTCTTGA 32803 Query 23833 ATACCTCGG 23841 |||||| || Sbjct 32804 ATACCTTGG 32812 Score = 410 bits (454), Expect = 3e-110 Identities = 385/489 (79%), Gaps = 1/489 (0%) Strand=Plus/Plus Query 23353 AAAAGGGATAGTCCAGCTCAGTAGTGCCACCAACAGCACGTCTGAAACACTGGCCGCGAC 23412 ||| |||||||| |||||||| ||||| |||||||||||||||||||| || || || || Sbjct 36459 AAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGTCTGAAACGCTTGCTGCAAC 36518 Query 23413 ATCGAAAGCGGTTAAGGCGGTAATGGATGAAACGAACAAGAAAGCGCCCTTAAACAGTCC 23472 | || |||||||||| |||||||||||||||||||| ||||| | || | |||||| Sbjct 36519 GCCAAAGGCGGTTAAGGTGGTAATGGATGAAACGAACAGAAAAGCCCACTGGA-CAGTCC 36577 Query 23473 TGCGTTGACCGGAACGCCAACAACGCCAACTGCGCGACAGGGAACGAATAATACCCAAAT 23532 || ||||||||||||||||| | ||||| |||| |||||| || |||||||| || Sbjct 36578 GGCACTGACCGGAACGCCAACAGCACCAACCGCGCTCAGGGGAACAAACAATACCCAGAT 36637 Query 23533 CGCAAGCACGGCTTTCGTTATGGCTGCGATTGCCGCCCTTGTAGATTCGTCACCTGACGC 23592 || | ||| ||||| || |||| |||||||| | || | || ||||||||||||| Sbjct 36638 TGCGAACACCGCTTTTGTACTGGCCGCGATTGCAGATGTTATCGACGCGTCACCTGACGC 36697 Query 23593 ACTGAATACGCTGAACGAGTTAGCGGCGGCGCTGGGAAACGACCCGAATTTTGCGACCAC 23652 ||||||||||||||| || | || || ||||| || || || || ||||||| ||||| Sbjct 36698 ACTGAATACGCTGAATGAACTGGCCGCAGCGCTCGGGAATGATCCAGATTTTGCTACCAC 36757 Query 23653 CATGACTAACGCGCTTGCGGGTAAGCAACCGAAAGATGCCACCCTGACGGCGCTGGCCGG 23712 |||||||||||||||||||||||| |||||||| |||| || |||||||||||||| || Sbjct 36758 CATGACTAACGCGCTTGCGGGTAAACAACCGAAGAATGCGACACTGACGGCGCTGGCAGG 36817 Query 23713 GCTTGCTACTGCGGCAGACAAGTTTCCGTATTTTACGGGGAATGATGTCGCCAGCCTGGC 23772 |||| | || ||| | | || || ||||||||| ||| ||||||| |||||||||| | Sbjct 36818 GCTTTCCACGGCGAAAAATAAATTACCGTATTTTGCGGAAAATGATGCCGCCAGCCTGAC 36877 Query 23773 AACCCTGACAAAAGTCGGGCGGGATATTCTTGCGAAATCGACCGTTGCTGCCGTTATCGA 23832 ||||| | || || |||||||||| || ||| ||||||| | ||| | || Sbjct 36878 TGAACTGACTCAGGTTGGCAGGGATATTCTGGCAAAAAATTCCGTTGCAGATGTTCTTGA 36937 Query 23833 ATACCTCGG 23841 |||||| || Sbjct 36938 ATACCTTGG 36946 Score = 87.8 bits (96), Expect = 4e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 23202 AGGATGCCAGCACGACGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCCACCAACAGCACGT 23261 ||||||| ||| ||| |||| || | || |||||||| || || ||||||||||||| Sbjct 32306 AGGATGCGGACACAACGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGT 32365 Query 23262 CTGAAACGCAGGCTGCAACGCCGAAAGCAGTAAAGG 23297 ||||||||| ||||||||||| || || || |||| Sbjct 32366 CTGAAACGCTTGCTGCAACGCCAAAGGCGGTTAAGG 32401 Score = 87.8 bits (96), Expect = 4e-13 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 23202 AGGATGCCAGCACGACGCGAAAAGGCCTTGTCCAGCTCAGTAGCGCCACCAACAGCACGT 23261 ||||||| ||| ||| |||| || | || |||||||| || || ||||||||||||| Sbjct 36440 AGGATGCGGACACAACGAGAAAGGGGATAGTGCAGCTCAGCAGTGCAACCAACAGCACGT 36499 Query 23262 CTGAAACGCAGGCTGCAACGCCGAAAGCAGTAAAGG 23297 ||||||||| ||||||||||| || || || |||| Sbjct 36500 CTGAAACGCTTGCTGCAACGCCAAAGGCGGTTAAGG 36535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114482204854784