Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2 150 2e-31 seq198 143 3e-29 seq201 140 4e-28 seq19 114 2e-20 seq3 102 1e-16 seq4 93.3 5e-14 seq1 87.8 2e-12 >seq2 Length=6328565 Score = 150 bits (166), Expect = 2e-31 Identities = 190/260 (73%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 146947 TGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACC 147006 |||||||| || | ||||| || ||||| || ||||| |||||||| || ||||| ||| Sbjct 4240746 TGCGCGTCACCGAATGTGTGGACGAAGTCGCCTGGCTTGAGGCCGGTGACCTGGGCAACC 4240805 Query 147007 ATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCC 147066 || ||| | |||| || || ||||||||||| || || || | ||| | Sbjct 4240806 ATTATGGTCAAAAGCGCATAAGATGCGATGTTGAAGGGAACGCCGAGAAAGACATCCGCG 4240865 Query 147067 GACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATG 147126 || | |||||| |||||||| ||||| | ||||| || || || |||||| ||||| | Sbjct 4240866 GAGCGCTGGTAAAGCTGGCAGGAGAGTTTGCCGTCCGCGACATAGAACTGGAACAGGGAG 4240925 Query 147127 TGGCACGGCGGCAGCGCCAT---GGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACC 147183 |||||||||||||||||||| | |||| || ||||||||||||||||| | | Sbjct 4240926 TGGCACGGCGGCAGCGCCATTTCATCAACCAGG---GCCGGGTTCCAGGCCGAGACGATC 4240982 Query 147184 AGCCGCCTGCTCTCGGGGTT 147203 || || | ||| || || || Sbjct 4240983 AGGCGGCGGCTTTCCGGATT 4241002 >seq198 Length=250510 Score = 143 bits (158), Expect = 3e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 ||||| || || |||| |||||||||| |||| ||| || ||||| || ||||| Sbjct 63943 GTCACCTGAGCAACCAGCCGCGTGAGCAGCGCGTAGGAGGCGATATTGAAAGGCACCCCG 64002 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 || ||||||||| | | |||||||| |||||| || |||||||| || ||||||||| Sbjct 64003 AGACCCATGTCCGCGCTGCGCTGGTACATCTGGCAGGACAGCTCCCCCTCCGCCACGTAA 64062 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAG 147171 |||||||| | ||||||||||| || || ||||| | ||||||| ||||||||| Sbjct 64063 AACTGGCAGAACATGTGGCACGGGGGGAGGGCCATCTTGCCGAGGTCCGACGGGTTCCAG 64122 Query 147172 GCCGAGA 147178 || |||| Sbjct 64123 GCAGAGA 64129 Score = 86.0 bits (94), Expect = 7e-12 Identities = 164/241 (68%), Gaps = 3/241 (1%) Strand=Plus/Plus Query 147383 CGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||||||||||| | ||| || | |||| | || | || ||| |||| | | Sbjct 65191 CGTCCCAGATGTGGATCCCCCTGTCCTTGAGCACGTTTGCGTTGGTGCAGCCGGAAACAA 65250 Query 147443 ACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGA 147502 |||| |||||||||||| || || | ||| || || | ||||||||| ||||| |||| Sbjct 65251 ACCACAGCAGCTCCTCCGCGACGCCGCGCCAGAACACGCGCTTGGTGGTGAGCAGCGGGA 65310 Query 147503 A---CTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGC 147559 | || |||||||| | | | ||| | || ||| ||||| || ||||| | Sbjct 65311 AGAGCTCCTCCCTCAGGCTGAAGCGCATCTGCACGCCGAACTTGGACAGGGTCCCCGTCC 65370 Query 147560 CCGTCCTGTCCTCCCTGCGCGTCCCGTTCTCCAAAATCTCCCTGACGGTGTTGAGGTACT 147619 | || | |||| |||||||| ||||| |||| || ||| || ||||||||||| Sbjct 65371 CGGTGCGGTCCCCCCTGCGCACGCCGTTTTCCAGGATGTCCTGCACCAGGTTGAGGTACT 65430 Query 147620 G 147620 | Sbjct 65431 G 65431 >seq201 Length=246981 Score = 140 bits (154), Expect = 4e-28 Identities = 204/286 (71%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 146904 GGCCAGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGT 146963 || |||||| | ||||| |||||| |||||| |||| ||| ||||| || | || Sbjct 13742 GGACAGCTGCAGTTTCACCTGCTCCATATGGTTGGAATAGATGTGGGCGTCGCCGATGGA 13801 Query 146964 GTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGA 147023 ||||| || || || |||| ||||| || ||||||| |||| ||||||| Sbjct 13802 ATGCACGAAATCGCCGGGCTCGTACCCGGTGACATGGGCCAGCATGACCAGAAGCAGCGC 13861 Query 147024 GTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTG 147083 ||| ||| ||||||||||| || |||||| |||||| |||| | ||||||||||| Sbjct 13862 GTAAGAGGCGATGTTGAAGGGCACGCCCAGGAACATGTCGGCCGAACGCTGGTACAGCT- 13920 Query 147084 GCACGAG-AGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCG 147142 ||| | | |||| |||| | | | | ||| |||||| |||| || || ||||||| Sbjct 13921 GCAGGTGCAGCTTCCCGCCCGAGATCCGCACCTGCCACAGGGTGTGACAGGGGGGCAGCG 13980 Query 147143 CCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCG 147188 |||| || | || || |||||||||||||| || | ||| || Sbjct 13981 CCATCTCGTCGACCTCGGCCGGGTTCCAGGCCGACACGATCAGGCG 14026 >seq19 Length=1029424 Score = 114 bits (126), Expect = 2e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146932 TGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCG 146991 ||||| |||| | ||| ||| || | ||| ||||| || || || || ||| || Sbjct 784995 TGGTTCTGGTACAGGTGACAGTCGCCGAAGGTATGCACGAACTCTCCAACCTCCAGGTCG 785054 Query 146992 GTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCC 147051 | ||||| | ||||| |||||||| | |||| ||| || ||||| || || ||| Sbjct 785055 CACTGTTGGGCAATCATGTGCGTGAGCAGAGCGTAGGAGGCAATATTGAACGGCACGCCC 785114 Query 147052 AGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAA 147111 ||| || ||| | | |||||| |||||||| || ||| |||||||||||||| Sbjct 785115 AGGAACAGGTCGGCGCTGCGCTGGTAGAGCTGGCAGGAAAGCCTTCCGTCGGCCACGTAG 785174 Query 147112 AACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 |||||| ||||| |||||| |||| ||| |||||| Sbjct 785175 AACTGGAACAGGCAGTGGCAAGGCGCCAGAGCCATG 785210 >seq3 Length=4400433 Score = 102 bits (112), Expect = 1e-16 Identities = 169/244 (69%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 146941 TAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGG 147000 |||| |||||| || || | ||||| ||||| || || ||||| || || || || | Sbjct 1995651 TAGAGGTGCGCATCGCCAAATGTGTGGACAAAATCACCAGGCTTGAGACCAGTGGCGCGC 1995592 Query 147001 GCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATG 147060 |||| ||| ||| | |||| || || ||||| || || || || ||| || Sbjct 1995591 GCCATCATCATGGTCAAAAGCGCATATGACGCGATGTTAAACGGCACGCCGAGGAAAATA 1995532 Query 147061 TCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCAC 147120 || |||| | ||| || |||||||| || ||| || || | || ||| || Sbjct 1995531 TCGGCCGAGCGCTGATAAAGCTGGCAGTTCAGACGCCCATCCATGACATTGAATTGGAAC 1995472 Query 147121 AGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACC 147180 ||| ||| || |||||||||||||| | || | || |||||||||||||| |||||| Sbjct 1995471 AGGCAGTGACAGGGCGGCAGCGCCATATCAGGGACATCAGCGGGGTTCCAGGCTGAGACC 1995412 Query 147181 ACCA 147184 |||| Sbjct 1995411 ACCA 1995408 >seq4 Length=3599618 Score = 93.3 bits (102), Expect = 5e-14 Identities = 215/323 (67%), Gaps = 22/323 (7%) Strand=Plus/Minus Query 146877 GAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGTT 146936 ||||| ||||| ||| ||||| | || || ||||| | |||| | |||| ||| || Sbjct 202143 GAGCTCGGGGAGGGGGCGGGGCTCCCGGGTGAGCTGTAGTTTCGCTTGATCCAGGTGATT 202084 Query 146937 GAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCT--TAAGGCCGGTC 146994 |||||||| ||| || || | |||||| || ||||||| |||| ||| ||| Sbjct 202083 GAGGTAGAGGTGGAGATCGCCGAAGGTGTGGACGAAGTCCCGGGGCTCGTAA--CCGCAG 202026 Query 146995 ACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGG 147054 | || || |||| | |||||| || | |||| ||| ||||||||||| || || || Sbjct 202025 ATTTGAGCGACCAGATGGGTGAGGAGAGCGTAGGAGGCGATGTTGAAGGGAACGCCTAGA 201966 Query 147055 CCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAG--CT-------CCCCG------ 147099 | || | | |||||| |||||||| ||||| || ||||| Sbjct 201965 AAAAGATCGGCGCTGCGCTGGTAGAGCTGGCAGGAGAGTCCTGGTTTGCCCCCGTTTTGA 201906 Query 147100 ---TCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGG 147156 || ||||| |||||| | |||| ||||| || || || ||||| | |||| | Sbjct 201905 GCTTCATGGACGTAGAACTGGAAAAGGAGATGGCAAGGGGGGAGGGCCATTTCCGGCACG 201846 Query 147157 TCCGCGGGGTTCCAGGCCGAGAC 147179 || || |||||| || ||||| Sbjct 201845 TCGGCCACGTTCCATGCGGAGAC 201823 >seq1 Length=7344524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/176 (70%), Gaps = 9/176 (5%) Strand=Plus/Minus Query 147013 GTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGACCTC 147072 ||||||| | ||||| ||||| || || || |||||||| | || | || | | Sbjct 588299 GTGAGCAAGGCATAGCTTGCTATATTAAAAGGTACCCCCAGAAATACATCAGCAGAACGC 588240 Query 147073 TGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCAC 147132 |||||||| |||||||| | | ||| || ||||||||||| ||| | ||| |||| ||| Sbjct 588239 TGGTACAGTTGGCACGACAATTTCCCATCAGCCACGTAAAATTGGAAGAGGGTGTGACAC 588180 Query 147133 GGCGGCAGC---------GCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGAC 147179 || || | | ||||| |||| | |||| |||||||||||||| || Sbjct 588179 GGTGGTAACCCTGCCTTGACCATGCCGGGGATATCCGGTGGGTTCCAGGCCGAAAC 588124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583482661084800