Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq4 120 1e-22 seq2 100 1e-16 >seq4 Length=3599618 Score = 120 bits (132), Expect = 1e-22 Identities = 230/331 (69%), Gaps = 10/331 (3%) Strand=Plus/Minus Query 36711 CCTCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCACGGACTGCGCCTGCT 36770 |||||| ||||| ||||||||||| |||| ||||||||| ||| || | || | Sbjct 1507355 CCTCGGGCCTGCCGGCACCGGGAAAACCTACCTGGCCATGGCGGTCGGCCTCCATATGTT 1507296 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830 | || |||||||||||| || || |||| |||||||| ||||||||| || ||| Sbjct 1507295 GAAGAAACGGGAAATCCAGCGCATCATCCTCACCCGCCCCGCGGTCGAGGCC--GGTGAA 1507238 Query 36831 G--CTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATG 36888 | ||||||| |||||| |||| | | || ||| | || || |||||| || | Sbjct 1507237 GCCCTCGGCTTCCTGCCAGGCGATCTACAGGAAAAGGTAGCCCCCTACCTGCGGCCCCTC 1507178 Query 36889 CTGGACGCGGTGATCGACCTGGTTG-GCCCGACGATGGCCAAGCGCCTGC-AGGAGACCC 36946 || || | | |||| || | | ||||| || ||| ||||| | | ||| | Sbjct 1507177 TACGATGCCATCAACGACATGCTCGATCCCGAAGA-GGCACAGCGCTACCTCGAAGAGCA 1507119 Query 36947 G-CCAGCTCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTC 37005 | || |||||||||| || || ||||||||||| ||||| ||| || | | | ||| Sbjct 1507118 GATCA--TCGAGATCGCTCCCCTCGCCTACATGCGTGGCCGCACCCTCTCCCGCTCCTTC 1507061 Query 37006 CTCATCGCCGACGAGATGCAGAACGCCACCC 37036 ||||| |||||| |||||| |||||| Sbjct 1507060 GTCATCCTCGACGAAGCCCAGAACACCACCC 1507030 >seq2 Length=6328565 Score = 100 bits (110), Expect = 1e-16 Identities = 312/474 (66%), Gaps = 13/474 (3%) Strand=Plus/Plus Query 4528 CCTGATCGTG---GACGAGTCGTCCATGGTCGACGAGTCGGTCGGTGAAGACCTCCTGTC 4584 |||||||||| ||||| | |||||||| || ||| ||||| | || | ||||| Sbjct 5308310 CCTGATCGTGATCGACGAATGCTCCATGGTGGATGAGGAACTCGGTAAGGATTTGCTGTC 5308369 Query 4585 GTTCGGTGTGCCAATCCTCGCCCTGGGCGACCCCGCCCAGCTGCCGCCGGTGGCCGGGGC 4644 ||||| ||| |||| | ||||||||||| |||||||||||||| || || | Sbjct 5308370 CTTCGGAACGCCGGTCCTTGTGCTGGGCGACCCGGCCCAGCTGCCGCCTGTCAAAGGTGG 5308429 Query 4645 TGGATTCTTCACC-AAGCAGAAGGCCGACTTCCTGCTGACCGACATCCACCGCCAGGCCC 4703 || | || ||| |||| ||| | || | ||||||| || |||| |||||||||| Sbjct 5308430 AGGCTATTTTACCGAAGCTGAA-CCGGATGTGATGCTGACGGAAGTCCATCGCCAGGCCC 5308488 Query 4704 GCGACAACCCCATCATTGAGATGTCGCGCATCGTCCGCGAGGGTGGAACCCTGAACCTGG 4763 ||||| || ||| | ||||| | | |||| || ||||| || | | Sbjct 5308489 AGGACAATCCTATCGTGCGCATGTCCATGACCATCCGGGATGGTGGCCAGCTCGATTATG 5308548 Query 4764 GCCGCTACGGAGACAGCGAAGTCGTCC-GGGGCGCTGACTTCCAGCGCGACTGGGTATTC 4822 || || || || ||| | ||| ||| ||||| || || | ||| | | | Sbjct 5308549 GCGTCTTTGGTGAAAGCAAGGTCATCCATCGGCGC-GAGATCGACAAGGACCAGATCCTG 5308607 Query 4823 CAGGCTGACCAGATTCTCGTCGGGAAAAACGACACCCGCCGAGCCTACAACGCTCGCATC 4882 |||| |||||| | || ||||| | ||| | || || || ||| |||| |||||| Sbjct 5308608 GAGGCCGACCAGGTGCTGGTCGGCACCAACAAGACACGGCGCCTCTATAACGGACGCATC 5308667 Query 4883 CGCGAGCTGCGCGGGGCCGAC-CGAGCTTACC--CTCTCAAGGGCGACAAGCTGGTCTGC 4939 ||||| ||| | |||| || | || || || ||||||||||| |||||| Sbjct 5308668 CGCGAACTGAAGGAATTCGACACGCCAATGCCGGCTGTC---GGCGACAAGCTTGTCTGC 5308724 Query 4940 CTTCGCAACAACCACGACTCGGGCCTGCTGAACGGCTCCCTCTGGACGGTCGAG 4993 || ||||| || | | ||| |||| ||||| |||||||| ||| || Sbjct 5308725 CTGCGCAATGACAAGACCAAGGGATTGCTCAACGGTGGGCTCTGGACAGTCAAG 5308778 Score = 95.1 bits (104), Expect = 4e-15 Identities = 128/174 (74%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 4175 TTCCGCCTGTTCGGGTATGCCGGCACGGGCAAGACCACCCTGGCCCGCCACATCGCTGAG 4234 || ||||||||||| ||||| ||||||||||||||||| || || || || | ||||| Sbjct 5308044 TTTCGCCTGTTCGGCTATGCGGGCACGGGCAAGACCACGCTTGCGCGTCATCTGGCTGAA 5308103 Query 4235 AACGTGGACGGGCTTGTGCTG-TTCGCCGCCCCGACCGGCAAGGCCGCCTACGTCCTGAA 4293 | | ||||| ||| ||| |||| ||| |||||||||||||| | |||||| Sbjct 5308104 GGCATTGACGGCGATGT-CTGTTTCGGCGCTTTCACCGGCAAGGCCGCGCATGTCCTGCG 5308162 Query 4294 GACCAAGGGCTGCCCGAACA--CCAGCACGATCCACCAGCTGATCTACACCCCG 4345 |||||||| |||| | || |||||||||| ||||||||| |||| Sbjct 5308163 CCAGAAGGGCTG--CGAAGATGCCGGCACGATCCATTCCCTGATCTACCGCCCG 5308214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180795228423816