Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_026608.1 Length=42093 Score E Sequences producing significant alignments: (Bits) Value seq307 111 4e-20 >seq307 Length=140073 Score = 111 bits (122), Expect = 4e-20 Identities = 280/419 (67%), Gaps = 24/419 (6%) Strand=Plus/Minus Query 38687 CGGTATTGACAACTATTTGCCGTTGTCCGATTGGCGCGACGGA-ACGCAGCACCTTGACT 38745 ||| || ||||| || ||||| |||| || |||||||| || ||| | ||||| ||| Sbjct 4866 CGGCATCGACAATTACCTGCCGCTGTCAGACTGGCGCGAGGGCGACG-ATCACCTGGACG 4808 Query 38746 ACGACGGGGTTAACGGGCCGGTTTCGCCATACGAACCCGACTACCTGCGGTCGAATATCG 38805 | || ||| |||| || |||| || ||| |||||| | | ||||||| Sbjct 4807 CCCACTGGG-----GGGC-----TCTCCAT--GACGTCGATTACCTGAAGGCCAATATCG 4760 Query 38806 AAGGCGGCGAATACTTCGATTGGTATTACTTGAACGCAGCCGACCGGGCCGCGCAAATCC 38865 | ||||| || ||||| ||||| ||| || | | ||| ||||| || ||| Sbjct 4759 AGGGCGGAGAGCTGTTCGACTGGTACTACCATTCCGACGAGGCCCGCGCCGCCCAGATCA 4700 Query 38866 GCACGCCTATTACCGACGGTGCCTACGGTAAACCATGGGTATTCCGCAACAAAGACTTCC 38925 | ||||| ||||||||||| || |||| | || ||| | | |||| ||| ||| ||| Sbjct 4699 GAACGCCCATTACCGACGGCGCGCACGGAGAGCCCTGGATCTGGCGCACCAAGGACATCC 4640 Query 38926 GTTCTTGGTGGAATAACTACCATTACAACCGC----CCCGGCTACGTCGAAGACGCTTCG 38981 | || | |||| | |||||| ||||| | ||| |||| | || || Sbjct 4639 GGTCCTTCTGGAGCCATGCGCATTACGACCGCATCGGCGGGCAGCGTC----AGGCGACG 4584 Query 38982 CCGACGGGTTGGGTTCCTAATTCAAAGCCGATTTGGTTTACTGAATTCGGCTTTCCTGCG 39041 || ||| ||||| || | || || ||||| ||||| || ||| | |||| | | || Sbjct 4583 CCAACGCCCTGGGTGCCGCAGTCGAAACCGATCTGGTTCACGGAACTGGGCTGTGCCGCC 4524 Query 39042 GTCGATAAAGGCACCAATCA-ACCAAACGTTTTCTACGACCCTAAGTCTTCCGAAAGCG 39099 || || || ||||| || || |||| || ||| | ||| || ||||| || |||| || Sbjct 4523 GTGGACAAGGGCACGAACCAGCCCAATCGCTTTGT-CGATCCCAAGTCCTCGGAAACCG 4466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134574830198120