Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1 181 1e-40 seq9 100 4e-16 seq115 87.8 2e-12 >seq1 Length=7344524 Score = 181 bits (200), Expect = 1e-40 Identities = 412/613 (67%), Gaps = 10/613 (2%) Strand=Plus/Minus Query 39452 TCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 39511 || || ||||| || ||||| ||||| || |||||| || || ||| || Sbjct 2684233 TCGGCTACAAACTCGATGTACTGGCACATCAGGTCGGCATTCATACCAATCAGTCCTACG 2684174 Query 39512 GGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTT 39571 || || || ||||||| ||| || ||||| || |||||||| | | || || | | Sbjct 2684173 GGGAGGGCATCCGTTACAAATTCCTTTTCAATTTCTACGGCATTGGCAATAATACCTCTC 2684114 Query 39572 AC--TACCTCATC--ACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627 || || || | | ||||||| | | | || ||| || ||||| ||||| Sbjct 2684113 ACCGTATCTTTTGGTAGCTTGTGGATGATGTGA-TCATTGTACAGCAAACAGGCAAAGTC 2684055 Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687 ||| || | |||||||| | || || || || ||||| || | || || ||||| | Sbjct 2684054 ACAGTGCATACCCTCATCACGGCTGATCAACTCATTAGAGAAGCTCAGACCCGGCATCAA 2683995 Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747 ||||||||| || | ||| || || | | || || |||||||||||||| || || || Sbjct 2683994 ACCACGCTTCTTCAACCAGAAGATCGAACAGAACGAACCAGAAAAGAAGATACCCTCCAC 2683935 Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCTGTGC 39807 ||||||||| || | || | ||| || | | | |||| | ||||| | || Sbjct 2683934 TGCTGCAAAGGCGATGAGGCGCTCAGCGAA---GGAACCATTCTCAATCCAACGCAAGGC 2683878 Query 39808 CCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATGTTT 39867 ||| || ||||| |||||||| || || || || || || || || || || | ||| Sbjct 2683877 CCACTCCGCTTTTTTCTTTACGCAGTCCAGGGTCTCGATGGCGTTGAACAGGTAGTCTTT 2683818 Query 39868 TTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTT 39927 ||| | | ||||||| ||| || || || | ||| || | || || ||||| || Sbjct 2683817 TTCCTTTGTGTCTTTAATATAGGTGTCGATGAGCAGGGAGTAAGTCTCCGAGTGGATATT 2683758 Query 39928 TTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG-AAC 39986 || ||| |||||||| ||||| || || | || || ||| |||||||| | || Sbjct 2683757 CTCCATCATGATCTGAAAGCCGTAGAAGAATTTGGCCTCCGTATACTGTACCTCGGCTAC 2683698 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| | | ||||||| || || || || || || ||| || |||||||| |||| || Sbjct 2683697 AAAGT-TCTCCGCCAGGTTCTCGTTTACGATCCCGTCAGAGGCCGCAAAAAAGGCCAGTA 2683639 Query 40047 CATGTTTAATAAA 40059 ||||||| || || Sbjct 2683638 CATGTTTTATGAA 2683626 Score = 132 bits (146), Expect = 7e-26 Identities = 880/1400 (63%), Gaps = 27/1400 (2%) Strand=Plus/Minus Query 68747 TGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTG 68806 |||| ||||| ||||| ||||| || | | |||| || || ||||| || |||| || | Sbjct 2686364 TGTAGATATTGCTGGTGTATGGCTCGAAACATTCGTTGTTGCCCAGGATCTGAGAGGTAG 2686305 Query 68807 ATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTAT 68866 | ||||||||||| || || |||| || || || | || |||| | | || | | Sbjct 2686304 AAGCAGTTGGCATTGGCGCTACCAGCAAGCTGTTGCGCAGGCCATTCTTCTTAATGTCCT 2686245 Query 68867 CTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTA 68926 || || | |||||||||| | || ||| ||| ||| | ||| || || | Sbjct 2686244 TCTTCAGCTCGGCCCAATCCCAACGTTCGCTTGGCGTCACACCCCACATATCATACTGCA 2686185 Query 68927 GAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTA 68986 | | || | || || ||| || ||||| | || |||| |||| || || || | Sbjct 2686184 GTACACCCTCGCTGGCTGGTGAGCCCTTATAACTCTCGTAAGTACCTTGCTCTTTGGCCA 2686125 Query 68987 GTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGAT 69046 | |||| ||| || | || | || || || || || ||||| | || || | | Sbjct 2686124 GGGCACAGCTTTCCGTCAGGGCCGCATAGTAGATGGTCTCAAAAATGTCTTTGTTCAATT 2686065 Query 69047 CTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCT 69106 |||| || ||||| ||||| || | | | ||| || ||||| ||||| |||| Sbjct 2686064 GGCGTGCCTCCTCGCTATCAAATGGGTAGCGCATCAAAATGAAGGCATCCGCCAAACCCT 2686005 Query 69107 GAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGAT 69166 | || || | |||||| || | ||| | | |||| | | || || |||||| | Sbjct 2686004 GTACACCCAAACCGATTGGGCGATGACGCATATTACTATTGCGTGCCTCCTCAATAGGGT 2685945 Query 69167 AATAATTAATATCTATAATTTTATTAAGATTTCGGACTAC--TAC-TTTAACCACGTCCT 69223 | || || ||||| |||| || || || || ||| || ||| | || ||| | Sbjct 2685944 AGTAGTTGATATCGATAACCTTGTTCAGGTTGCGGGTCACGATACGGGTTACTTCGTAC- 2685886 Query 69224 TTAGTTTGAGAAAATC--AAAT--CGTCCATCTATAACAAACATATTCAGTGCTACAGAT 69279 || ||| || || | ||| | ||| | || | || |||||| | | Sbjct 2685885 --AGGCGCTCAAAGTCGTAAGTGCCGT-CTTCTTTTACGTATTTACCCAGTGCCAAACTC 2685829 Query 69280 GCTAGATTACAAACTGCTACCTCATTAGAATTTGCA---TATTGTATTATCTCTGTACAT 69336 || || ||||| || ||||| |||| || |||| || | || ||||| ||||| Sbjct 2685828 GCGAGGTTACATACCGCTACTTCATCAG---GTGCAGTGTACTCGATGATCTCGGTACAA 2685772 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 || || | ||| || ||||| || ||||| || ||||| ||| || ||| Sbjct 2685771 AGGTTTGAGCTGCGGATGGTACCCAGGTTCTGCTGGTTGCTCTTGCGGTTGGCCGCATCC 2685712 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 |||||||| ||| |||| ||||| ||||| ||||| ||| | ||||| ||| | Sbjct 2685711 TTGTAAAGGATATACGGTGTACCGGTTTCGATCTGGCTTTCCAAAATAGCGAACCACAAA 2685652 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATA-TTGTGTATATAGCCG 69515 | || |||| || | | ||| ||| | || || || || ||| || Sbjct 2685651 TCTTGTGCTTTTACCACTTTGCGGGCACGACCCTCCTGCTCGTACTTATG-ATAGAGTGC 2685593 Query 69516 TTCGAATTCATCTCCCCAAACATCATCCA-ATCCAGGACATTCATTTGGACACATCAATG 69574 |||||| || | | || ||| || || | || |||||| ||| | || | Sbjct 2685592 TTCGAACTCGCCACTGTGTACGTCAAACAGATTC-GGTGCTTCATTCGGATCGAACAGCG 2685534 Query 69575 ACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGC-TATA 69633 |||| | | | || || || || ||| || | ||| |||||||| | ||| || | Sbjct 2685533 ACCAGTCGCCGTTTTCTTTCACGCGGCGCATGAACAAATCCGGAATCCACATAGCGTAGA 2685474 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 | || || | | | ||||| || || ||||| || || || || || || Sbjct 2685473 ACAAG-TCACGAGCGCGCAACTCTTCCTTACCGTGGTTTTTCTTCAGTTCCAGGAAGTCG 2685415 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | | ||| | ||||| || || || || || || | | | || || ||| || Sbjct 2685414 AATACATCTGCGTGCCAGGGCTCCAGGTAAATAGCGAAGGCACCTTTACGCTTACCACCA 2685355 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 ||||| || | ||| | |||||||| || | ||| ||| |||||| | |||||| || Sbjct 2685354 CCCTGGTCAACGTAGCGGGCAGTGTCGTTGAATACTTTCAACATCGGTACAATACCGTTG 2685295 Query 69814 GATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGA 69873 |||| ||| || || || || || | || || || ||| ||| | | Sbjct 2685294 CTGGTACCGCCTGTACCTTTGATGTAGCTACCCTTAGCCCGGATGTTATGAATGCTCAAA 2685235 Query 69874 CCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCC 69933 || || || || ||| | || || | ||||| || | | || || | ||||| Sbjct 2685234 CCAATACCACCAGCCGACTGGGAAATGCGCGCACAGCGGTCGAGGGTTTCGAAAATACCG 2685175 Query 69934 TCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTT 69993 |||||||| || |||| | ||| || ||||| |||| ||| | || || Sbjct 2685174 GGAATGCTATCTTCCGTCATCGACAAAAGGAAGCAGCTCGACAATTGTGGGCGTGGTGTG 2685115 Query 69994 CCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTAT 70053 |||||||||| | ||||||| ||||| | ||||| || | ||| | ||| || || Sbjct 2685114 GCCGCATTAAAGAGGGTAGGAGTAGCGTGGATAAACCACTTCTGAGACATCAGGTTATAC 2685055 Query 70054 GTTTCAATAGCTGATTCT--ATATCCCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 || || ||| | ||| ||||| || || |||| ||| || |||||||||| Sbjct 2685054 GTCTC--CAGCACACTCTCAATATCTGTTCCGTGGATGCCTACCGCAACGCGCATCAACA 2684997 Query 70112 TATGCTGAGGTCGTTCTACC 70131 ||||||| || || || ||| Sbjct 2684996 TATGCTGCGGACGCTCCACC 2684977 >seq9 Length=1386778 Score = 100 bits (110), Expect = 4e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || ||||||||||| | || || | ||||| ||||| || || Sbjct 883934 GCAGGCGAAGTCGCAGTGCAGGCCCTCATCGCGGCTGATCATCTCGTTCGAAAACGTCAG 883875 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CCAGAAAAGA 39734 || ||||| ||||| ||||| |||||||| || ||||| ||| ||| | || || |||| Sbjct 883874 CCCGGGCATCAGACCCCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTCCCCGAGAAGA 883816 Query 39735 AGATGCC 39741 | ||||| Sbjct 883815 AAATGCC 883809 >seq115 Length=378902 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 39608 AACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAA 39667 |||| || ||| |||||||| || |||||||| || | || || | ||||| || Sbjct 238473 AACAGTAGGCAAGCGAAGTCGGTGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTCGAG 238414 Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT-CC 39726 || || || ||||| || || |||||||||||||| || | ||| ||| ||| | || Sbjct 238413 AAGCACAGGCCGGGCATCAGGCCGCGCTTTTTGAGCCAGAAGACGGC-GCAGAAGCTGCC 238355 Query 39727 AGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTC 39771 || ||||||||||| || || || || || ||||| || | ||| Sbjct 238354 GGAGAAGAAGATGCCCTCCACGGCCGCGAACGCAACGAGCCGCTC 238310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902514784480