Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027334.1 Length=47800 Score E Sequences producing significant alignments: (Bits) Value seq509 262 1e-65 seq2 188 2e-43 >seq509 Length=47832 Score = 262 bits (290), Expect = 1e-65 Identities = 816/1239 (66%), Gaps = 48/1239 (4%) Strand=Plus/Plus Query 15869 ATGACCGAACCGGTTTTCGGCAGCAGCTATTCGCGCACCCAGGATGAGCCGGTGCCGGTG 15928 ||||||||||| || || || | |||| ||||| | | |||||| ||||||| | Sbjct 22535 ATGACCGAACCAGTCTTTGGAATGAGCTTCACGCGCCCGGACGATGAGATCGTGCCGGCG 22594 Query 15929 CTCGGTGCCGACTTTTCCCAGGCCATCATCTTCGACACCTCGACCGATGCC---GACCCG 15985 || ||||||||||| || ||| || | |||| || || | || || | | Sbjct 22595 CTTGGTGCCGACTTCTCTCAGATGCTCCTGATCGAAACGTCCGCGGACGCTTCGGTTGCC 22654 Query 15986 GCATATTTCATCGA-AGGCGAGCCGCGCCGGATCTCCACCTCGGATCCCGAGGCGATCGC 16044 | |||| ||| | || ||| || ||||||| ||| ||| ||||||| | | Sbjct 22655 GAATATCCGGCCGACACGC---CCGTGC-GGATCTCGACCAGCGATGCCGAGGCCGTATC 22710 Query 16045 CAAGCTGGGCACCGACAATCTCCTCGACGCGGTGCGCGGCATCAATGCCCAGCTCACCAA 16104 | || || |||| || ||| || || || ||||| | |||||||||| | Sbjct 22711 CGCACTCGGTACCGGGCTGCTGGCCGATGCCGTCAAAGGGATCAACGACCAGCTCACCGA 22770 Query 16105 CCTCAATTCTGGCGCCGACGTGACGATCTTCCGTGTCGCCGAGGGCGTCGATGCCGCGGC 16164 || || || || || || ||||||||| | || || ||||||||||| |||| || || Sbjct 22771 TCTGAACTCCGGTGCGGATGTGACGATCGTTCGCGTTGCCGAGGGCGTGGATGTTGCCGC 22830 Query 16165 GACCGCTGCGAACATCGCGGCCGCGCTCGGCCAGATCGGTGCCG---TGCCGGACGAGGT 16221 |||||| ||| ||| || ||| | | | | || |||| | || || || Sbjct 22831 GACCGCAGCGGCCATTGCCGCCA---TTGTCAACGGCGTTGCCAGCATCCCCACCGCAGT 22887 Query 16222 CAACGCCACGCCGCGCCTGATCTTCGCCGGCAGCACCGCCTATCAT---GAGCCCGCCAC 16278 |||| || |||||| | || | ||||| |||| |||| | || | || || Sbjct 22888 CAACAAGACCCCGCGCATTGTCGTTGCCGGTCGCACTGCCTGGCGCCCGGATCTCGAAAC 22947 Query 16279 GGCGAGCCCGGTCATCACGGCGCTGCCGGAGGCGTGCGAG--AAGATGCTGGCGATCGCG 16336 | | |||||| ||| |||| ||| | || | | | ||||| |||| | || Sbjct 22948 CACCAACCCGGTGATCGCGGCACTG--GAAGCCAACCTCGGCAAGATCATGGCTGTTGCC 23005 Query 16337 CCGGTCGATGTCTCGGATGTCTCGGCGGCCGAGGCGATCGCCGATCGCGAGTTCATCGCC 16396 || ||||| || || || |||| | || |||| || |||||| || || Sbjct 23006 CCTGTCGACGTTGACGACACTTCTGCGGTGAACGCCATCGACGCGCGCGAGACGATGACC 23065 Query 16397 TCCGAGCGCATCATGCCGATTGGTGTCGCCGCCCGGGTGTTCGAAGGTGAGGCGATCGTG 16456 || || || | |||||||| |||||||| || ||| | || |||| | | | || Sbjct 23066 TCGGAACGTCTGATGCCGATCGGTGTCGCGGCAAAGGTCTGGGATGGTGCGCAGGTTGTC 23125 Query 16457 ACGCGCCCGATGTCGCCGCGGGT-GCTCGGCCTGTTCATGCGGGTCGATAACGAGAACGC 16515 || || |||||| ||| || || ||| || ||| | |||| |||| || || || Sbjct 23126 ACCCGTCCGATGATGCCCCGCGTTGCT-GGTCTGATGGCGCGGATCGACAATCAGGTCGG 23184 Query 16516 CGGC---AAGCCGTTTGACCCGATCGCCAATCGGCAGATCCAGGGCCTGGCCGGTCTGTC 16572 |||| |||||||| |||| | ||||| || || | | ||||| |||||||| || Sbjct 23185 CGGCGGCAAGCCGTTCCACCCATTTGCCAACCGCGAGCTGTATGGCCTTGCCGGTCTTTC 23244 Query 16573 CCGCGCCATCCCGTTCTCGATCACCGACGGCTCGACCGAAGGCCAGCAGCTGCTGGACGC 16632 ||| |||||||| || | ||||| || |||||||||||||||||||| | || Sbjct 23245 CCGGAAGATCCCGTTTTCCACGCTGGACGGTTCCACCGAAGGCCAGCAGCTGCTTGCGGC 23304 Query 16633 CGAGGTCTCGATCGTCACCAAGGGCGCGGTCAATGTGGATGGCGCGCTCGCCTCCGGCGG 16692 | | ||| | ||||| || | |||| | ||| ||||||||| | ||| ||||| Sbjct 23305 CAACGTCGCCATCGTGGCCGAAGGCGAAACCGGTGTTGATGGCGCGATTGCCGATGGCGG 23364 Query 16693 GT-TCACATTCGTCGGCACCGACGGTGCGTCCGA-CTCGCCGTTCTACAAGCAAATCCAC 16750 || || | ||| |||| || ||| || || || | | | | | |||| |||||| Sbjct 23365 GTATCGC-TTCATCGGTACGGACAACGC-TCAGACCGGGGAGCTGTGGGAGCAGATCCAC 23422 Query 16751 CAGGTGCGCGGCGCGGATTACATCACCGTCAAGTGGTTGA---ACATCACCAAGCGCTTC 16807 ||||||||||| | |||||||||| ||| | | | | | |||||||| | ||| Sbjct 23423 CAGGTGCGCGGAACCGATTACATCA---TCACGCAGATCATCGAGATCACCAACCAGTTC 23479 Query 16808 CTCGGCAAGAAGATTTCGGCGGACGTGGTCGAGGCGTATATCAACTCGATTCTGTTCATG 16867 || || | ||| |||||| ||| | | |||||||||||| ||| | Sbjct 23480 CTTGGTCGGCGCATTCATGCGGACACAACGGAGTCCTGGATCAACTCGATTGCGTTTGCG 23539 Query 16868 CTGCGGGACGAAAAGGCCGAGGACAACATCCTGGGCTACA-ACCG-----CGACGTCTTC 16921 ||||| ||| | ||||| ||||||||| ||||| | ||| | | | ||| Sbjct 23540 CTGCGTGACCATGTCAACGAGGGCAACATCCTCGGCTATACGCCGAAGGACCAGATGTTC 23599 Query 16922 ATTGCCGACCAGAATTCGCCCGAGAACATCCGCCTCGGCCGGATCAAGCT--CGATCCGC 16979 | || |||||| || || ||||||||||| |||||| ||||||| | ||| Sbjct 23600 AAGGCTAGCCAGAACAGCCCGGAAAACATCCGCCTTGGCCGGCTCAAGCTGACAATC--G 23657 Query 16980 GCATTGAG-TATGCGCCGGTCTTCAAGCTGGCCCATGCGGACTTCCATCCGTACCGCCCG 17038 |||| ||| ||| |||||||||||||| ||||| || ||| | |||||| ||| Sbjct 23658 GCATCGAGCCGTGC-CCGGTCTTCAAGCTCGCCCAGCACGAGATCCGCCGGTACCGGCCG 23716 Query 17039 GCGGTCGAGGGGCTGATCGACGAGATCGTCTCGCGTCTG 17077 || ||||| || || |||||||| || |||||||| Sbjct 23717 GCCGTCGACAACCTCGTCAACGAGATCATCGCGCGTCTG 23755 Score = 181 bits (200), Expect = 3e-41 Identities = 341/498 (68%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 17201 CTCACTGCCGTCGACGTGCGCCGCGCGACGGAAAC---CGGCACCTCGAGTGCCATCATC 17257 || || ||||| || || ||||| ||| ||||| ||| || ||| | | || Sbjct 23841 CTGACAGCCGTAGATGTTCGCCGTGCG---GAAACGCCCGGTACGTCGCGGGTTCACACA 23897 Query 17258 CTGTCCAAGCTGACCATTCCGCCCGTCAAGCTGAAGAAGGCCGCCCATGATCCCGGCGGC 17317 | || |||||||| || ||||| |||| | || ||| | |||| | || ||||| Sbjct 23898 ATTTCGAAGCTGACTATCCCGCCGATCAAATTCGCGACGGCAGGCCATAACCCTGGCGGG 23957 Query 17318 GGCGTGATGGAGGTCAACTTCACCCAGCCGCGCATCGAGACGCTCGAGCCGGCCTTTTCG 17377 ||||||||| | ||||||||| || ||||| ||| |||| ||||| || | Sbjct 23958 AGCGTGATGGCTGCGGACTTCACCCTTCCTCGCATTGAGGCGCTTGAGCCAAAGTTCATG 24017 Query 17378 GTGAAGGGCCTGGATACCGATATTTTCCGCGGCTATGGCGAGGCCGACCGCTGGACCTTC 17437 || || ||||| |||||||| | ||| |||| || ||| ||| || ||| || Sbjct 24018 GTCAAAGGCCTCGATACCGAGGTGTTCGGCGGTCTCGGTGAGCGCGATCGATGGGTTTTT 24077 Query 17438 GCCGGCGCCTACAAGGATAAGCAGAGCGG----CCGGGATCTGGCGGGCCGCGGCATTAT 17493 || || || |||| || || | | ||| | || | ||| | ||||| |||| Sbjct 24078 GCGGGTGCGTACACTGAGAAATATACCGGAGTTCAGGTACCTGCTCG--CGCGG--TTAT 24133 Query 17494 CGAGGGCGCGGTCACGGATTGGGAGCCGGATGAAAGCGACCCGGCCGAGTTCCAGGGCTG 17553 ||| || || |||||| | |||||| | |||||||||||||||| ||| |||||||| || Sbjct 24134 CGAAGGTGCCGTCACGCAATGGGAGTCCGATGAAAGCGACCCGGTCGATTTCCAGGGTTG 24193 Query 17554 CAACCATATGTATTCGGAGGTCACCCATTTCGAGTTTCTGCTCGACGGGGTGGAGCTGAT 17613 ||||| | |||| || || || ||||| || ||||||||| ||||||| | Sbjct 24194 TAACCACGCTTTGACGGAAGTGACGCACTTCGAATTCACGCTCGACGGCAAGGAGCTGTT 24253 Query 17614 CTATTTCGACTTCTGGGAGCGGGTCGCCCGCTTCAAGGGCCGGGATTTGTTCGCCGGCGT 17673 ||| ||||||||||||| || || ||| || || |||||||||| || || Sbjct 24254 CTACATCGACTTCTGGGAACGCATCCTTCGCCGGAACGGTGTCGATTTGTTCGAAGGGGT 24313 Query 17674 GCGCAACGCGCTCGGCGC 17691 ||| ||| |||||||| Sbjct 24314 ACGCGGCGCTCTCGGCGC 24331 Score = 109 bits (120), Expect = 2e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 8568 TCGAGCAGATGAAGACGCTGTTCGGCCATATGATGCGGGTCGGGCCGGTCGAAGTGATCG 8627 ||||| | |||| || | |||||| || ||||| ||| |||| || | |||| ||||| Sbjct 11747 TCGAGATGCTGAAAACCCGGTTCGGGCAGATGATCCGGATCGGACCTATTGAAGAGATCG 11806 Query 8628 ATGCGGTCAAGGGGTATCGGTTGAAGCTGGGCGATGGCGAGGATGGTCCGTTCCTGTCGC 8687 | ||| |||||| || ||| | ||||| ||||| | || || || ||||| ||||||| Sbjct 11807 ACCCGGCCAAGGGATACCGGATCAAGCTTGGCGACGATGAAGACGGCCCGTTTCTGTCGC 11866 Query 8688 CCTGGTACCCGCACCCGGAGACCGG 8712 |||||| ||||||||||| | ||| Sbjct 11867 CCTGGTTGCCGCACCCGGAAAGCGG 11891 >seq2 Length=6328565 Score = 188 bits (208), Expect = 2e-43 Identities = 691/1070 (65%), Gaps = 38/1070 (4%) Strand=Plus/Minus Query 16049 CTGGGCACCGACAATCTCCT---CGACGCGGTGCGCGGCATCAATGCCCAGCTCACCAAC 16105 || ||||||| | ||||| ||| || ||| | || ||||| | ||||| || || Sbjct 3126952 CTTGGCACCGGC---CTCCTGGCCGATGCCGTGAGGGGTATCAACGATCAGCTGACTGAC 3126896 Query 16106 CTCAATTCTGGCGCCGACGTGACGATCTTCCGTGTCGCCGAGGGCGTCGATGCCGCGGCG 16165 |||||| | || ||||| || || | |||| |||||||| || |||||| | ||| | Sbjct 3126895 CTCAATGCCGGGGCCGATGTCACAGTGGTCCGAGTCGCCGAAGGTGTCGATACTGCGACC 3126836 Query 16166 ACCGCTGCGAACATCGCGGCCGCGCTCGGCCAGATCGGTGCCGTGCCGGACGAGGTCAAC 16225 || || || ||||||| || | || | | ||| | | ||| |||||||| Sbjct 3126835 ACGGCGGCCTCGATCGCGGACGTGGTCAACAACATCACCAGCATCCCGTCGAAGGTCAAC 3126776 Query 16226 GCCACGCCGCGCCTGATCTTCGCCGGCAGCACCGCCTATCAT---GAGCCCGCCACGGCG 16282 || |||||| | || ||||||| | || |||| | || | || |||| | Sbjct 3126775 AAGACACCGCGCATTGTCGTCGCCGGTCGGACTGCCTGGCGCCCGGATCTCGACACGACC 3126716 Query 16283 AGCCCGGTCATCACGGCGCTGCCGGAGGCGTGCGAG--AAGATGCTGGCGATCGCGCCGG 16340 | ||||| ||| | ||||| | || | | | ||||| |||||| | ||||||| Sbjct 3126715 AATCCGGTGATCGCAGCGCTA--GAAGCCAATCTCGGAAAGATCCTGGCGGTGGCGCCGG 3126658 Query 16341 TCGATGTCTCGGATGTCTCGGCGGCCGAGGCGATCGCCGATCGCGAGTTCATCGCCTCCG 16400 |||||||| ||| ||| | ||| | ||||| | || ||||| || || | Sbjct 3126657 TCGATGTCGATGATACTTCGACCGCCAATGCGATTGACGCCCGCGAAACGATGAATTCAG 3126598 Query 16401 AGCGCATCATGCCGATTGGTGTCGCCGCCCGGGTGTTCGAAGGTGAGGCGATCGTGAC-G 16459 |||| | || ||||||||||| || || || | | || || | || ||||||| | Sbjct 3126597 AGCGTTTGATCCCGATTGGTGTTGCGGCGCGCATCTGGGACGGCGCTTCGGTCGTGACAG 3126538 Query 16460 CGCCCGATGTCGCCGCGGGTGCTCGGCCTGTTCATGCGGGTCGATAACGAGAACGCCGGC 16519 | ||| ||| ||||||| ||| || ||| | ||||| |||| ||| | | ||| Sbjct 3126537 CACCC-ATGGCGCCGCGTGTGGCTGGTCTGATGGTGCGGATCGACAACCAAGTTGGTGGC 3126479 Query 16520 AA---GCCGTTTGACCCGATCGCCAATCGGCAGATCCAGGGCCTGGCCGGTCTGTCCCGC 16576 ||||||| | ||||||||||| || | | | | || ||||| | ||| || ||| Sbjct 3126478 GGATTGCCGTTTCAACCGATCGCCAACCGTCCGCTTTATGGACTGGCGGCTCTTTCGCGC 3126419 Query 16577 GCCATCCCGTTCTCGATCACCGACGGCTCGACCGAAGGCCAGCAGCTGCTGGACGCCGAG 16636 || |||||||||| | ||| || |||| ||| |||||||||||||| | ||| | Sbjct 3126418 AAAATTCCGTTCTCGACCGTCGATGGATCGAGCGAGGGCCAGCAGCTGCTTGCAGCCAAT 3126359 Query 16637 GTCTCGATCGTCACCAAGGGCGCGGTCAATGTGGATGGCGCGCTCGCCTCCGGCGGGTTC 16696 || ||||| ||| | | || | | ||| || |||||| | || ||||| | | Sbjct 3126358 GTGTCGATTGTCGCGGAAGGAGAAACCGGTGTTGACGGCGCGGTTGCTGATGGCGGCTAC 3126299 Query 16697 ACATTCGTCGGCACCGACGGTGC---GTCCGACTCGCCGTTCTACAAGCAAATCCACCAG 16753 || | ||||||||| ||| ||||| || | | |||| |||||||| Sbjct 3126298 CGCTTTATTGGCACCGACAATGCCATGTCCGGTGAGC---TGTGGGAGCAGTTCCACCAG 3126242 Query 16754 GTGCGCGGCGCGGATTACATCACCGTCAAGTGGTTGA---ACATCACCAAGCGCTTCCTC 16810 |||||||| | || || || ||||| | | | | | ||||| || || ||| Sbjct 3126241 GTGCGCGGGACCGACTATAT---CGTCACGCAGATCATCGAGATCACAAACAACTATCTC 3126185 Query 16811 GGCAAGAAGATTTC-GGCGGACGTGGTCGAGGCGTATATCAACTCGATTCTGTTCATGCT 16869 ||| | | ||| || || | ||| || | || | |||| | || | || Sbjct 3126184 GGC-CGCCGTGTTCATGCCGATACTGCCGAAGCCTGGATAAGCTCGCTCGGCTTTGTCCT 3126126 Query 16870 GCGGGACGAAAAGGCCGAGGACAACATCCTGGGCTAC------AACCGCGACGTCTTCAT 16923 || || | ||||| | ||||||||| || || || | | | |||| Sbjct 3126125 TCGAGATCACAAGGCTTCTGGCAACATCCTTGGGCACACTCCAAAGCACCTGATGTTCAA 3126066 Query 16924 TGCCGACCAGAATTCGCCCGAGAACATCCGCCTCGGCCGGATCAAGCTCGATCCGCGCAT 16983 || ||| || || |||||||| ||||||||| | ||| |||||| |||| Sbjct 3126065 AGCTAGCCAAAACAGCCCTGAGAACATTCGCCTCGGCACGCTCAGTCTCGATATTGGCAT 3126006 Query 16984 TGAGTATGCGCCGGTCTTCAAGCTGGCCCATGCGGACTTCCATCCGTACCGCCCGGCGGT 17043 |||| || ||||| |||||||||||| | || ||| | | ||||| ||||| Sbjct 3126005 TGAGCCTGTTCCGGTTTTCAAGCTGGCCAAGTACGAGATCCGCCGCTGGCGCCCTGCGGT 3125946 Query 17044 CGAGGGGCTGATCGACGAGATCGTCTCGCGTCTGAACACCATCGCCTGAC 17093 || |||||| | |||| ||||| | || || |||| | ||||| || Sbjct 3125945 TGAAGGGCTGGTGAACGAAATCGTTGCCCGGCTCAACAACGACGCCTAAC 3125896 Score = 80.6 bits (88), Expect = 8e-11 Identities = 112/157 (71%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 17478 CGGGCCGCGGCATTATCGAGGGCGCGGTCACGGATTGGGAGCCGGATGAAAGCGACCCGG 17537 |||| |||| | ||||| ||||| | | | |||||| ||||||||||||| || | Sbjct 3125553 CGGGGCGCGCGGTGATCGAAGGCGCAATTTCCCAATGGGAGTCGGATGAAAGCGATCCTG 3125494 Query 17538 CCGAGTTCCAGGGCTGCAACCATATGTATTCGGAGGTCACCCATTTCGAGTTTCTGCTCG 17597 | | ||||| |||| ||| || |||| |||| ||| | |||||| |||||| Sbjct 3125493 ATGCTTATCAGGGATGCACCCACATTCTGACGGAAGTCATCCACTACGAGTTCGTGCTCG 3125434 Query 17598 ACGGGGTGGAGCTGATCTATTTCGACTTCTGGGAGCG 17634 |||| |||||| |||||| ||||||| ||||| Sbjct 3125433 ACGGCCAGGAGCTTTTCTATTGGGACTTCTTTGAGCG 3125397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152837071452208