Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq493 778 0.0 >seq493 Length=52014 Score = 778 bits (862), Expect = 0.0 Identities = 469/493 (95%), Gaps = 1/493 (0%) Strand=Plus/Plus Query 23002 TAAGTTCGATCTCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACAGCCAGGCGTC 23061 ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 51164 TAAGTTCCAGATCCTCCTGGCAACTTGCACAAGTCCGACAACCCTGAACGACCAGGCGTC 51223 Query 23062 TTCGCTCATCTATCGGATCGCCACACTCACAACAATGAGTTGCGGATACAGTCTGGTAGT 23121 |||| ||||||||||||||||||||||||||||||||||| || |||| || ||||| || Sbjct 51224 TTCGTTCATCTATCGGATCGCCACACTCACAACAATGAGTGGCAGATATAGCCTGGTGGT 51283 Query 23122 TCAGACGACGCATTTTTATTGCTGTATTGCGCTGTAATTCTTCGATTTCTGATGCTGAAT 23181 |||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 51284 TCAGGCGGCGCATTTTTATTGCTGTGTTGCGCTGTAATTCTTCTATTTCTGATGCTGAAT 51343 Query 23182 CAATGATGTCTGCCATCTTTCATTAATCCCTGAATTGTTGGTTAATACGCTTGAGGGTGA 23241 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 51344 CAATGATGTCTGCCATCTTTCATTAATCCCTGAACTGTTGGTTAATACGCTTGAGGGTGA 51403 Query 23242 ATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCACCG 23301 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 51404 ATGCGAATAATAAAAAAGGAGCCTGTAGCTCCCTGATGATTTTGCTTTTCATGTTCATCG 51463 Query 23302 TTCCTTAAAGACGCCGTTTAACATACCGATTGCCAGACTTAAGTGAGTCGGTGTGAATCC 23361 |||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| Sbjct 51464 TTCCTTAAAGACGCCGTTTAACATGCCGATTGCCAGGCTTAAATGAGTCGGTGTGAATCC 51523 Query 23362 CATCAGCGTTACCGTTTCGCGGTGCTTCTTTAGTACGCTACGGCAAATGTCATTGACGTT 23421 |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 51524 CATCAGCGTTACCGTTTCGCGGTGCTTCTTCAGTACGCTACGGCAAATGTCATCGACGTT 51583 Query 23422 TTTATCCGGAAACTGCTGTCTGGC-TTTTTTGATTTCATAATTAGCCTGACGGGCAATGC 23480 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 51584 TTTATCCGGAAACTGCTGTCTGGCTTTTTTTGATTTCAGAATTAGCCTGACGGGCAATGC 51643 Query 23481 TGCGAAGGGCGTT 23493 ||||||||||||| Sbjct 51644 TGCGAAGGGCGTT 51656 Score = 109 bits (120), Expect = 1e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 24269 CATACACTCTCCCGTTTATTATTTATCTCCTCAGCCAGCCGCTGGGCTTTCAGCGGATTT 24328 |||||| | | |||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 51940 CATACAGCCCCTCGTTTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAGTGGATTT 51999 Query 24329 CGGATAACAGAAAGG 24343 ||||||||||||||| Sbjct 52000 CGGATAACAGAAAGG 52014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122722133228584