Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cladosiphon_20okamuranus_20[genbank_20GCA_5F001742925.1_202016-08- 18] 732 sequences; 169,730,751 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq493 82.4 8e-11 >seq493 Length=52014 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/165 (72%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 156886 GCTGCGGTGTATCCTTCCGGCTCTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAA 156945 |||| | |||||| || || || ||||||||||| || || |||||||| ||| Sbjct 32934 GCTGTCGCGTATCCATCGGGTGTGCTTCCTGATATGCGAGGCTGGACAATCAAGGGGAAA 32993 Query 156946 CCATCC---GGGCGTGCTGTATTAAGTACAGAAGCA-GACGGTGTTAAGTCACATAGCCA 157001 || || || ||||||||||| | ||| | || || || ||||||| || | ||| Sbjct 32994 CCCGCCAGCGGTCGTGCTGTATTGTCT-CAGGAACAGGATGGAATTAAGTCGCACACCCA 33052 Query 157002 TAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAGACCACTTC 157046 ||||| |||||||| | || |||||||| || || ||||| || Sbjct 33053 CAGTGCCAGTGCATCCGGTACGGATTTGGGGACGAAAACCACATC 33097 Score = 82.4 bits (90), Expect = 8e-11 Identities = 119/165 (72%), Gaps = 5/165 (3%) Strand=Plus/Plus Query 156886 GCTGCGGTGTATCCTTCCGGCTCTCTGCCTGATATGCGTGGTCAAACTATCAAGGGTAAA 156945 |||| | |||||| || || || ||||||||||| || || |||||||| ||| Sbjct 37068 GCTGTCGCGTATCCATCGGGTGTGCTTCCTGATATGCGAGGCTGGACAATCAAGGGGAAA 37127 Query 156946 CCATCC---GGGCGTGCTGTATTAAGTACAGAAGCA-GACGGTGTTAAGTCACATAGCCA 157001 || || || ||||||||||| | ||| | || || || ||||||| || | ||| Sbjct 37128 CCCGCCAGCGGTCGTGCTGTATTGTCT-CAGGAACAGGATGGAATTAAGTCGCACACCCA 37186 Query 157002 TAGTGCAAGTGCATCAAGCACAGATTTGGGTACTAAGACCACTTC 157046 ||||| |||||||| | || |||||||| || || ||||| || Sbjct 37187 CAGTGCCAGTGCATCCGGTACGGATTTGGGGACGAAAACCACATC 37231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534468709566560